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ropls package: Recreating scores calculation from an OPLS-DA model
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
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5.6 years ago rekren ▴ 20
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question for "Chapter 24 Zeisel mouse brain (STRT-Seq) in single-cell"
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5.6 years ago camillab. ▴ 10
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Correctly set contrast with DESeq2 for not full rank design matrix
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5.6 years ago twtoal ▴ 10
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5.6 years ago peirinl • 0
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is there a function in edger the same as vst or rlog in deseq2
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Change fontsize/remove name of annotation ComplexHeatmap package
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updated 5.6 years ago by ▴ 290 • written 5.6 years ago by ▴ 10
46,725 results • Page 162 of 935
Recent ...
Replies
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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