1
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3
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1.9k
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502 error biomaRt getLDS()
ensembldb biomaRt
updated 16 months ago by 68k • written 23 months ago by ▴ 10
1
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1
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829
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Empty Results from champ.DMP Despite Expected Output
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updated 16 months ago by 68k • written 16 months ago by • 0
0
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2
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ReactomeGSA adjustment for confounding variables
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written 16 months ago by • 0
3
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6
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Deseq: What does "BaseMean" mean?
deseq2
written 7.3 years ago by • 0
0
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1
reply
1.5k
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question about gseGO() in clusterprofiler package
clusterProfiler
updated 16 months ago by ★ 4.1k • written 16 months ago by • 0
0
votes
0
replies
504
views
Z-score Interpretation across components
MAST
16 months ago GJ • 0
0
votes
1
reply
593
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error for the geneGOEnricher function of the NoRCE package
NoRCE
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
2
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1.6k
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Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
RNASeq DESeq2
updated 16 months ago by ★ 1.4k • written 16 months ago by • 0
1
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4
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1.9k
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BiomaRt Possible Ensembl SSL connectivity problems detected.
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updated 13 months ago by • 0 • written 16 months ago by • 0
1
vote
5
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2.3k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 16 months ago by • 0
1
vote
2
replies
684
views
Review process for delivering R packages
Bioconductor
16 months ago XFWu • 0
4
votes
11
replies
1.7k
views
Size factor normalized counts for between sample comparisons - correct?
DESeq2
16 months ago boczniak767 ▴ 740
0
votes
3
replies
943
views
Open Sesame: in what genes are my differentially methylated probes!!
MethylationArray sesameData sesame
updated 13 months ago by • 0 • written 16 months ago by ▴ 10
0
votes
2
replies
655
views
DiffBind for MBD-seq
MBD-seq DiffBind
16 months ago Marianna ▴ 20
0
votes
0
replies
689
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Job: Ensembl Job Vacancies
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16 months ago Aleena_Ensembl ▴ 30
2
votes
9
replies
1.6k
views
Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multiple Tissues and Patients
edgeR variancePartition
updated 16 months ago by 53k • written 16 months ago by • 0
0
votes
1
reply
800
views
News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
16 months ago Maria Doyle ▴ 110
1
vote
2
replies
719
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Questions in Regards to LFC shrinkage in DESeq2
Dseq2 RNASeqData apeglm
16 months ago Gordon • 0
3
votes
4
replies
857
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Gene filtering in DESeq2
DESeq2
updated 16 months ago by ★ 5.0k • written 16 months ago by • 0
0
votes
2
replies
822
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Inquiry on Using DESeq2 for Analyzing Differential Translation Efficiency
RiboSeq DESeq2
written 16 months ago by • 0
1
vote
2
replies
515
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Deseq2 - differenc in results
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written 16 months ago by • 0
3
votes
3
replies
981
views
voom does not seem to properly correct for library size
limma
updated 16 months ago by 53k • written 16 months ago by ★ 5.0k
1
vote
3
replies
624
views
Missing test data for RiboProfiling package
RiboProfiling
updated 16 months ago by 68k • written 16 months ago by • 0
2
votes
8
replies
1.5k
views
AffylmGUI does not start wit R 4.4.1
affylmGUI
updated 15 months ago by 53k • written 16 months ago by ▴ 30
0
votes
7
replies
1.1k
views
DESeq design with and without intercept is giving different results
DESeq2
written 16 months ago by • 0
1
vote
5
replies
1.5k
views
RNASeq normlization for samples with global shift in gene expression
qsmooth DESeq2 limma Normalization
updated 16 months ago by 53k • written 16 months ago by • 0
1
vote
3
replies
1.6k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 16 months ago by • 0
0
votes
3
replies
981
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Merging multi-fastq samples in recount3
recount3
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0
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2
replies
1.3k
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recount
recount
updated 16 months ago by ★ 1.1k • written 3.6 years ago by • 0
0
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3
replies
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More significant genes after lfcShrink in DEseq2?
DESeq2
written 16 months ago by • 0
0
votes
0
replies
741
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
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updated 16 months ago by ▴ 10 • written 16 months ago by ▴ 180
0
votes
0
replies
562
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BioCAsia 2024 Abstract Deadline - August 26th
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16 months ago Maria Doyle ▴ 110
0
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3
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Differential expression analysis in time course experiments with DESeq2
DESeq2 limma DifferentialExpression
updated 16 months ago by 53k • written 16 months ago by • 0
0
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1
reply
487
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CleanUpRNAseq package
CleanUpRNAseq
updated 16 months ago by ▴ 20 • written 16 months ago by • 0
0
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3
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800
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Create TidySummarizedExperiment from RangedSummarizedExperiment?
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written 16 months ago by • 0
0
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3
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flowAI: flow rare check in R vs FlowJo
flowAI
updated 16 months ago by • 0 • written 22 months ago by • 0
0
votes
2
replies
703
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Analysis of transcription inhibition with DESeq2
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2
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4
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# Invalid keytype: GOALL. Please use the keytypes method to see a listing of valid arguments.
clusterProfiler makeOrgPackage gseGO
updated 16 months ago by 68k • written 16 months ago by • 0
6
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5
replies
4.3k
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What is the importance of `--countReadPairs` in featureCounts on paired end data?
featureCounts DESeq2
updated 11 months ago by ▴ 20 • written 16 months ago by • 0
0
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reply
749
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DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
16 months ago • updated 10 months ago Ian D. ▴ 70
0
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1
reply
977
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installing "org.Hs.eg.db",go error
org.Hs.eg.db
updated 16 months ago by 4.2k • written 16 months ago by • 0
4
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5
replies
13k
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[sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
sva
updated 16 months ago by • 0 • written 8.2 years ago by ▴ 60
3
votes
4
replies
1.4k
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using limma trend workflow in CAMERA
CAMERA limma
16 months ago Jiahao Tian • 0
0
votes
0
replies
513
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Are equal whisker lengths important in an RLE plot?
EDASeq EDA
16 months ago BioinfGuru ▴ 70
0
votes
0
replies
752
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News: EuroBioC Updates: Important Deadlines
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3
votes
3
replies
1.7k
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the count matrix have decimal values
DESeq2 DifferentialExpression
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
2
replies
1.2k
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R is Removing the Gene Names in My Count Data
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updated 16 months ago by ▴ 70 • written 16 months ago by • 0
1
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4
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17 months ago • updated 16 months ago Bob ▴ 30
0
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1
reply
640
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Using DESeq2 for Analyzing AMR Gene Variations in Water Samples Post-Treatment
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updated 16 months ago by • 0 • written 16 months ago by • 0
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
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