Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
8
replies
1.6k
views
Thoughts on computer purchase
computer
written 18.0 years ago by
Lance Palmer
▴ 60
1
vote
9
replies
2.6k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
9.0 years ago
sergio.espeso-gil
• 0
1
vote
8
replies
1.7k
views
boxplot, microarray, hugene 2.0 st
boxplot
microarray
pd.hugene.2.0.st
9.0 years ago
kanacska
▴ 10
0
votes
9
replies
1.8k
views
(no subject)
limma
limma
updated 19.5 years ago by
Sailendra Gummadi
▴ 10 • written 19.6 years ago by
karen
▴ 30
0
votes
10
replies
1.7k
views
Harsh results using limma!
limma
limma
updated 19.7 years ago by
A.J. Rossini
▴ 810 • written 19.7 years ago by
michael watson IAH-C
★ 3.4k
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago
Bogdan
▴ 670
28
votes
25
replies
5.8k
views
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
Gviz
rtracklayer
updated 6.8 years ago by
aina.jene
▴ 10 • written 7.2 years ago by
Ramiro Magno
▴ 100
0
votes
7
replies
2.0k
views
simpleaffy error
simpleaffy
simpleaffy
19.8 years ago
kfbargad@lg.ehu.es
▴ 260
0
votes
8
replies
2.0k
views
CRISPRseek: annotate gene
CRISPRseek
9.5 years ago • updated 8.9 years ago
Julie Zhu
★ 4.3k
1
vote
10
replies
2.2k
views
GEOquery
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Harpreet Saini
▴ 20
0
votes
9
replies
1.0k
views
Compare results from different analysis (Affymetrix)
updated 17.4 years ago by
Darlene Goldstein
▴ 230 • written 17.4 years ago by
Ingrid H. G. Østensen
▴ 700
0
votes
16
replies
1.9k
views
Re: [S] Error in clustering procedure
Clustering
Clustering
updated 19.6 years ago by
Stephen Henderson
★ 1.0k • written 19.6 years ago by
cstrato
★ 3.9k
0
votes
12
replies
2.2k
views
how deal with multiplicate affy probes?
mgu74av2
probe
affy
mgu74av2
probe
affy
updated 20.1 years ago by
Ron Ophir
▴ 80 • written 20.1 years ago by
Johnnidis, Jonathan
▴ 50
0
votes
7
replies
1.4k
views
how to split one word into letters
updated 19.5 years ago by
John Zhang
★ 2.9k • written 19.5 years ago by
Liu, Xin
▴ 130
0
votes
13
replies
1.8k
views
Is a number within a set of ranges?
Cancer
Cancer
16.5 years ago
Daniel Brewer
★ 1.9k
0
votes
13
replies
2.8k
views
Sorting matrix by column
updated 11.5 years ago by
James W. MacDonald
65k • written 11.5 years ago by
Guest User
★ 13k
0
votes
13
replies
2.3k
views
alternate /tmp for Bioconductor install
updated 18.9 years ago by
Seth Falcon
★ 7.4k • written 19.0 years ago by
Robert Citek
▴ 120
0
votes
8
replies
2.1k
views
Gviz and AnnotateTrack and memory usage
gviz
updated 8.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
Bogdan
▴ 670
0
votes
8
replies
1.8k
views
error message in gcrma
cdf
affy
gcrma
matchprobes
plier
cdf
affy
gcrma
matchprobes
plier
updated 17.9 years ago by
Seth Falcon
★ 7.4k • written 17.9 years ago by
Mohammad Esad-Djou
▴ 520
2
votes
12
replies
2.3k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation
orgdb
8.2 years ago
knishida
▴ 20
1
vote
15
replies
3.2k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 7.6 years ago by
Leonard Goldstein
▴ 180 • written 7.7 years ago by
Sylvain Foisy
▴ 80
0
votes
8
replies
1.8k
views
getBioC problem
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Amy Mikhail
▴ 460
3
votes
9
replies
5.0k
views
DESeq2 results with RUVSeq values
deseq2
ruvseq
sizefacotrs
updated 9.0 years ago by
davide risso
▴ 950 • written 9.0 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
7
replies
628
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
8 weeks ago • updated 3 days ago
shepherl
3.8k
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 9.1 years ago by
willem.ligtenberg
▴ 150 • written 9.4 years ago by
Guangchuang Yu
★ 1.2k
1
vote
14
replies
11k
views
Unable to connect from R 3.2.2
biocinstaller
source
8.5 years ago • updated 8.4 years ago
michel.renou
• 0
6
votes
14
replies
5.9k
views
GenomicAlignments is too slow with summarizeOverlaps
genomicalignments
RNASeq
genomicfeatures
summarizeoverlaps
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
bioprog
• 0
0
votes
7
replies
1.9k
views
DiffBind:Treatments + second factor
DiffBind
diffbind
updated 9.5 years ago by
Rory Stark
★ 5.2k • written 9.5 years ago by
sergio.espeso-gil
• 0
0
votes
32
replies
3.9k
views
How to do clustering
updated 16.9 years ago by
Seth Falcon
★ 7.4k • written 16.9 years ago by
ssls sddd
▴ 260
5
votes
18
replies
3.2k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
8.9 years ago • updated 8.8 years ago
elle
▴ 10
0
votes
8
replies
1.7k
views
Problem creating a contrast matrix
updated 16.8 years ago by
James W. MacDonald
65k • written 16.8 years ago by
Siarhei Manakou
▴ 100
0
votes
6
replies
1.3k
views
AnnBuilder failing Taffy examples
AnnBuilder
AnnBuilder
21.8 years ago
Barry Henderson
▴ 250
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 6.9 years ago by
tongtong.wang1210
• 0 • written 7.3 years ago by
Olorin
▴ 50
0
votes
7
replies
1.4k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
updated 14.1 years ago by
Ivan Gregoretti
▴ 310 • written 14.1 years ago by
Julie Zhu
★ 4.3k
0
votes
6
replies
2.1k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore
spillover
flowcytometry
updated 6.2 years ago by
Samuel Ahuno
• 0 • written 8.2 years ago by
Daniel Prieto
• 0
3
votes
10
replies
4.5k
views
ChIPseeker question: enrichPeakOverlap to find enrichment of genomic annotations in peaks from GRanges
chipseeker
updated 8.5 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
francesca casalino
▴ 50
0
votes
7
replies
2.0k
views
analyzing HumanHT12 with lumi
Microarray
Normalization
probe
lumi
Microarray
Normalization
probe
lumi
updated 14.6 years ago by
die_stevie@web.de
▴ 50 • written 14.6 years ago by
Stefanie Figura
▴ 30
0
votes
9
replies
1.5k
views
Problem with ArrayQuality Package version 1.12
updated 16.8 years ago by
Paquet, Agnes
▴ 500 • written 16.8 years ago by
Peter White
▴ 80
0
votes
10
replies
2.5k
views
Protein/peptide mass
17.9 years ago
john seers IFR
▴ 810
0
votes
7
replies
1.8k
views
Limma and time-course data
limma
limma
updated 18.2 years ago by
Gordon Smyth
50k • written 18.2 years ago by
michael watson IAH-C
★ 3.4k
0
votes
8
replies
1.9k
views
Biological replication (was RNA degradation problem)
Normalization
probe
affy
affyPLM
Normalization
probe
affy
affyPLM
18.3 years ago
Naomi Altman
★ 6.0k
0
votes
7
replies
1.0k
views
Statistics for Diagnostic Microarrays
updated 19.8 years ago by
A.J. Rossini
▴ 810 • written 19.8 years ago by
michael watson IAH-C
★ 3.4k
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways
GO
Survival
Cancer
Organism
annotate
affydata
vsn
AnnBuilder
globaltest
GO
vsn
updated 17.4 years ago by
David Lapointe
▴ 190 • written 17.4 years ago by
John Zhang
★ 2.9k
0
votes
12
replies
1.9k
views
agi4x44kpreprocess package
updated 15.2 years ago by
Pedro López Romero
▴ 360 • written 15.2 years ago by
Erika Melissari
▴ 250
8
votes
16
replies
2.7k
views
Setting package name in makeTxDbPackage
genomicfeatures
txdb
updated 8.9 years ago by
Marc Carlson
★ 7.2k • written 9.0 years ago by
Diego Diez
▴ 760
5
votes
11
replies
2.1k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 6.5 years ago by
Thomas Carroll
▴ 420 • written 6.5 years ago by
Victor Goitea
▴ 10
0
votes
9
replies
1.8k
views
problem with function rma
Normalization
rat2302
cdf
genefilter
affy
simpleaffy
affyQCReport
affyio
Normalization
updated 16.9 years ago by
Seth Falcon
★ 7.4k • written 16.9 years ago by
julin@aecom.yu.edu
▴ 80
2
votes
7
replies
2.7k
views
SomaticSignatures, cannot reproduce use case
somaticsignatures
'IRanges
9.5 years ago
Anna N.
• 0
5
votes
15
replies
2.6k
views
Rqc for RNA-Seq data
Rqc
8.2 years ago
kritikamish99
▴ 10
0
votes
7
replies
1.2k
views
Installing bioconductor under MacOsx
reposTools
reposTools
updated 21.0 years ago by
Byron Ellis
▴ 280 • written 21.0 years ago by
Martino Barenco
▴ 110
45,581 results • Page
2 of 912
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards
• All
Popular Question
to
Leo Lahti
▴ 40
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Locations
• All
The city by the bay,
12 minutes ago
France,
12 minutes ago
Singapore,
31 minutes ago
WEHI, Melbourne, Australia,
2 hours ago
Australia,
3 hours ago
Traffic: 659 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6