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1
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700
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Query regarding phyloseq object construct with QIIME output
phyloseq microbiome Metagenomics
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21 days ago • updated 20 days ago Henry ▴ 10
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22 days ago • updated 21 days ago Shefali • 0
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22 days ago • updated 21 days ago Tim Barry • 0
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Convert Seurat Object to Summarised Experiment or ExpressionSet
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22 days ago Eryn • 0
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22 days ago Dennis • 0
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24 days ago arne.sahm • 0
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27 days ago andromeda • 0
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28 days ago fredrikwallberg • 0
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Ensembl plants at annotationHub?
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updated 28 days ago by • 0 • written 5.4 years ago by ★ 3.9k
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CombineArrays for EPIC and EPIC V2
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28 days ago Macsue • 0
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r
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45,611 results • Page 4 of 913
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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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