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What are the various factors which make affordable 2 BHK flats in Gurgaon the best option for first-time buyers?
mouse430a2.db
1 hour ago
reeltor537
• 0
0
votes
5
replies
2.3k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
written 10.0 years ago by
john.hu
• 0
0
votes
3
replies
2.4k
views
PCA outliers cleaning
scRNAseq
Pipeline
Seurat
SingleCellExperiment
written 6.3 years ago by
albadrs.93
▴ 10
1
vote
2
replies
2.8k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
written 3.9 years ago by
forlani.luca
• 0
0
votes
2
replies
116
views
soGGi error
soGGi
written 4 days ago by
Daniel
• 0
0
votes
1
reply
106
views
Chip Seq Analysis of RNA Polymerase 2
ChIPseeker
ChIPSeqData
ChIPSeq
Bioconductor
written 5 days ago by
Gaurav
• 0
5
votes
3
replies
580
views
Limma-voom sample weights and impact on DEG numbers
limma
written 6 weeks ago by
A.Barden
▴ 20
0
votes
1
reply
153
views
Job:
Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics (MSCA PF / EMBO)
Epigenetics
JobPosting
Neuroscience
updated 2 days ago by
mudasarnaeem2020
• 0 • written 5 days ago by
lalit.kaurani
• 0
0
votes
1
reply
149
views
News:
The Call for Abstracts for BioC2026 is open!
Bioconductor
Conference
written 6 days ago by
laurah ondari
• 0
0
votes
3
replies
281
views
Confirm that OpenStats will not be archived (pryr dependency)
OpenStats
written 12 days ago by
Marina
• 0
0
votes
15
replies
1.5k
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
written 19 months ago by
abhisek001
• 0
20
votes
6
replies
11k
views
Tutorial:
Updated Support Site Editor
support.bioconductor.org
editor
markdown
updates
Tutorial
written 7.0 years ago by
shepherl
4.3k
0
votes
0
replies
14
views
Spam:
PokeChill
customCMPdb
AMOUNTAIN
7 days ago
play
0
0
votes
1
reply
2.6k
views
Tutorial:
[LIBD rstats club] Bioconductor overview
bioconductor
libdrstats
Tutorial
written 5.8 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
1
reply
131
views
msmsTests, inconsistent sign between lFC.Av and LogFC
msmsTests
Proteomics
9 days ago
Ben
• 0
0
votes
1
reply
131
views
DESeq2 for 16S rRNA Analysis
DESeq2
updated 10 days ago by
James W. MacDonald
68k • written 10 days ago by
lizflor
• 0
0
votes
0
replies
99
views
News:
Deadline Extended: EuroBioC2026 Call for Abstracts
Bioconductor
Conference
10 days ago
laurah ondari
• 0
0
votes
3
replies
1.5k
views
ChAMP trouble reading csv file
ChAMP
written 2.6 years ago by
Keasiykan
• 0
0
votes
0
replies
59
views
bcftools norm Equivalent
Rsamtools
12 days ago
Dario Strbenac
★ 1.6k
0
votes
5
replies
251
views
Lowly expressed genes reported as significant when using lfcThreshold in DESeq
RNASeq
DESeq2
DifferentialExpression
updated 12 days ago by
Michael Love
43k • written 13 days ago by
Ahmed Salah
• 0
0
votes
2
replies
196
views
lfc shrinkage estimator in DESeq2
DESeq2
written 13 days ago by
julia_mcdonough
• 0
2
votes
1
reply
188
views
Array weights in dpcDE
limpa
updated 13 days ago by
Gordon Smyth
53k • written 13 days ago by
Matt
• 0
0
votes
2
replies
158
views
Justify title track when rotation = 0
Gviz
gviz
written 19 days ago by
Xenia
• 0
0
votes
2
replies
183
views
Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 14 days ago by
Gordon Smyth
53k • written 18 days ago by
DN
• 0
0
votes
13
replies
831
views
Making a Full Rank Model for Allele-Specific Expression with DESeq2
DESeq2
updated 13 days ago by
Gordon Smyth
53k • written 19 days ago by
chp265
• 0
0
votes
1
reply
163
views
Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
written 19 days ago by
Xenia
• 0
0
votes
2
replies
300
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 16 days ago by
LillianaVolkman99
• 0 • written 26 days ago by
Omer
• 0
0
votes
6
replies
626
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 20 days ago by
Martin Morgan
25k • written 9 weeks ago by
Benjamin
• 0
0
votes
1
reply
274
views
DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage
DESeq2
contrast
updated 19 days ago by
ATpoint
★ 5.0k • written 23 days ago by
ja569116
• 0
2
votes
6
replies
499
views
limpa analysis advice
limpa
updated 11 days ago by
Gordon Smyth
53k • written 23 days ago by
SamGG
▴ 360
0
votes
1
reply
146
views
News:
The BioC2026 Sticker Design Contest is Open!
Bioconductor
Conference
written 24 days ago by
laurah ondari
• 0
4
votes
2
replies
361
views
When to use edgeR or limma
edgeR
limma
updated 23 days ago by
Gordon Smyth
53k • written 26 days ago by
abzhang97
• 0
1
vote
3
replies
241
views
Incosistencies in buildSNNGraph() function
scran
seurat
written 29 days ago by
Lucas
• 0
0
votes
2
replies
1.1k
views
A problem occurs when running the monocle2
monocle
written 4 months ago by
yuheng_yang
• 0
0
votes
7
replies
567
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 18 days ago by
Gordon Smyth
53k • written 25 days ago by
emily.wolfrum
• 0
0
votes
2
replies
183
views
Questions about bacon QC and correction on EWAS results
bacon
written 26 days ago by
sup0903
• 0
3
votes
4
replies
357
views
Question about the filterByExpr function inputs in edgeR
RNASeq
filter
design
edgeR
model.matrix
26 days ago • updated 25 days ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
156
views
Development of MSstat workflow to analyze DIA time series data
MSstats
updated 26 days ago by
Gordon Smyth
53k • written 26 days ago by
sithurandi
• 0
0
votes
0
replies
323
views
MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
27 days ago
srkingwu
• 0
8
votes
8
replies
2.9k
views
Confounded design, batch effect correction (edgeR)
rnaseq
edger
differential gene expression
batch effect
written 7.4 years ago by
Laura
▴ 20
0
votes
1
reply
132
views
Junction CPM via Snapcount and Recount3
snapcount
recount3
written 27 days ago by
henry.tietz
• 0
3
votes
4
replies
472
views
Clarification on counting in Rsubread (featureCounts)
featureCounts
Rsubread
updated 26 days ago by
Gordon Smyth
53k • written 8 weeks ago by
Luca
• 0
0
votes
1
reply
141
views
News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
written 27 days ago by
Frances Turner
▴ 20
0
votes
1
reply
158
views
How to convert .raw data for use in xcms
xcms
written 28 days ago by
Monica
• 0
0
votes
1
reply
356
views
Job:
Open Positions for Doctoral Researchers in Molecular Medicine
JobPosting
written 28 days ago by
rubina.tabassum
• 0
1
vote
1
reply
181
views
News:
Bioconductor Maintainer Application
maintainer
policy
Bioconductor
Devel
devel
written 4 weeks ago by
shepherl
4.3k
0
votes
1
reply
500
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
written 11 months ago by
info
▴ 10
0
votes
1
reply
384
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 7 months ago by
Wei Shi
★ 3.6k
0
votes
2
replies
2.5k
views
ChAMP pipeline error (champ.import)
software error
written 6.8 years ago by
mhebba
• 0
0
votes
2
replies
352
views
Combining two proteomics datasets with limpa
limpa
ProteomicsWorkflow
limma
4 weeks ago • updated 18 days ago
Andrew Pattison
• 0
46,744 results • Page
1 of 935
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Comment: Jobs at Ensembl
by
frostybuddyy
• 0
I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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