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Replies
Answer: fast apply on RleList
by
story.benjamin
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solved with viewApply (code is simplified below) + map reduce on chrs
test.split <- split(test.gr,seqnames(test.gr))
final.st…
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Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
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There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
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In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
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