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DittoDimPlot errror: Cannot find 'NA' in this Seurat object
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updated 9 months ago by ▴ 10 • written 9 months ago by ▴ 10
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updated 11 months ago by • 0 • written 2.6 years ago by ▴ 10
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11 months ago • updated 10 months ago bhandary.8590 ▴ 20
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12 months ago • updated 11 months ago Habil Zare ▴ 200
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4 months ago Luca • 0
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updated 3 months ago by 50k • written 4 months ago by • 0
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updated 2 days ago by • 0 • written 5.2 years ago by ▴ 50
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updated 7 months ago by ▴ 40 • written 19 months ago by ▴ 20
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15 days ago • updated 11 days ago gene_bioconductor ▴ 10
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metagene: paired-end bam as input
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should statmod be a dependency of limma and not a suggests?
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updated 9 months ago by 50k • written 8.0 years ago by • 0
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updated 5 months ago by 50k • written 2.4 years ago by ▴ 10
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updated 9 months ago by 50k • written 9 months ago by • 0
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updated 10 months ago by 50k • written 10 months ago by ▴ 10
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5 months ago bas_work ▴ 30
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updated 3 months ago by 50k • written 3 months ago by • 0
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Fishpond/Swish Interaction Test Error
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11 months ago Miguel ▴ 20
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[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
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3 months ago isaac.vock • 0
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Memory errors using read.bismark?
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5 weeks ago • updated 10 days ago Juan Higareda • 0
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Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
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How to get DESeq2 sizefactors from data imported using tximport
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updated 12 months ago by • 0 • written 6.9 years ago by • 0
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DESeq2 unable to handle large count values
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updated 8 weeks ago by 42k • written 6 months ago by • 0
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Method to find pathways different between 2 groups
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12 days ago • updated 2 days ago Chris ▴ 10
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edgeR - Design matrix for comparisons of all and subsets of samples
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updated 3 months ago by 65k • written 4 months ago by • 0
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Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
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updated 7 months ago by 42k • written 8 months ago by • 0
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DecideTest vs topTAGs in edgeR
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updated 6 months ago by 50k • written 6 months ago by ▴ 10
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updated 4 months ago by ★ 4.0k • written 4 months ago by • 0
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Can DESeq2 rlog normalized matrix reflects time course result directly?
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updated 1 day ago by ★ 4.1k • written 3 days ago by • 0
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4 months ago • updated 3 months ago Dario Strbenac ★ 1.5k
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updated 3 months ago by ▴ 160 • written 3 months ago by ★ 1.5k
1,000 results • Page 3 of 20
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
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