Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
26
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
1 day ago
k200987
• 0
0
votes
0
replies
82
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
10 days ago
Dinesh
• 0
0
votes
0
replies
41
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
3 days ago
Researcher
• 0
0
votes
0
replies
81
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
14 days ago
Ian D.
▴ 70
0
votes
2
replies
264
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
24 days ago • updated 22 days ago
shuwangxinze1996
• 0
1
vote
2
replies
182
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
3 days ago • updated 13 hours ago
BioinfGuru
▴ 30
0
votes
0
replies
90
views
Enzyme Engineering
BioTIP
29 days ago
bocchemistry
• 0
0
votes
0
replies
92
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
17 days ago
Chris
▴ 10
0
votes
1
reply
52
views
Retrieving ceRNA data from the starBase or ENCORI Web API
microRNA
starBase
ceRNA
WebAPI
ENCORI
2 days ago • updated 1 day ago
Bhavya
• 0
0
votes
0
replies
26
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
20 hours ago
Shaimaa Gamal
• 0
0
votes
0
replies
141
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
22 days ago • updated 13 days ago
glaciya2018
• 0
0
votes
0
replies
64
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
7 days ago
neilzhao
▴ 30
0
votes
3
replies
139
views
ChAMP installation issue
Cha
ChAMP
4 days ago • updated 2 days ago
e1271094
• 0
0
votes
8
replies
380
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 22 days ago by
swbarnes2
★ 1.4k • written 23 days ago by
Aaliya
• 0
0
votes
0
replies
95
views
flowStats for CyTOF
flowStats
14 days ago
tholmes
• 0
0
votes
0
replies
12
views
Spam:
Unveiling Unmatched Best Custom Patches
SIMAT
20 hours ago
oliverelijhan
0
0
votes
0
replies
94
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
26 days ago
vaxahey107
• 0
0
votes
3
replies
279
views
A ComBat-seq issue: the covariates are confounded
ComBat-seq
sva
updated 28 days ago by
W. Evan Johnson
▴ 850 • written 4 weeks ago by
schlumbohm
• 0
0
votes
0
replies
116
views
dba.plotProfile() plotting and interpretation
DiffBind
13 days ago
Henry
▴ 10
2
votes
7
replies
354
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
9 days ago • updated 5 days ago
sajadahmad41454
• 0
0
votes
0
replies
99
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
22 days ago • updated 18 days ago
Sara
• 0
0
votes
3
replies
212
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 14 days ago by
ATpoint
★ 4.1k • written 15 days ago by
james.zhang20
• 0
1
vote
3
replies
886
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 22 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
0
votes
0
replies
65
views
Treeio as.treedata function seq lenght error
treeio
9 days ago
nromerov
• 0
0
votes
0
replies
88
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
14 days ago
yvonneh
• 0
0
votes
0
replies
43
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
23 hours ago
Anton01
• 0
0
votes
0
replies
97
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
22 days ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
25
views
Difference in Contrast in DiffBind
DiffBind
1 day ago
zzrammal
• 0
0
votes
1
reply
108
views
Input Question for deseq.r
RSeqAn
updated 28 days ago by
ATpoint
★ 4.1k • written 29 days ago by
Nina
• 0
1
vote
2
replies
233
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
29 days ago • updated 28 days ago
Le
• 0
0
votes
0
replies
105
views
I am trying to detect alternative splicing.
ASpli
26 days ago
Sebashish
• 0
0
votes
4
replies
261
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
29 days ago • updated 27 days ago
lonn
• 0
0
votes
0
replies
26
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
1 day ago
danalvoronov
▴ 10
0
votes
2
replies
77
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
3 days ago • updated 2 days ago
Yveto
• 0
0
votes
0
replies
132
views
Warning while loading DEP package
DEP
updated 28 days ago by
shepherl
3.9k • written 28 days ago by
Namrata
• 0
0
votes
2
replies
279
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
6 weeks ago • updated 27 days ago
isaac.vock
• 0
0
votes
0
replies
31
views
determine k during RUVSeq
RUVSeq
RUVnormalize
19 hours ago • updated 18 hours ago
Ειρήνη
• 0
1
vote
2
replies
176
views
Error in champ.load(): The following specified files do not exist
ChAMP
29 days ago • updated 28 days ago
Sherin
• 0
2
votes
13
replies
475
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
25 days ago • updated 22 days ago
fernanda.backsouza
▴ 10
0
votes
0
replies
133
views
Empty table plot using plotGseaTable()
fgsea
15 days ago • updated 13 days ago
Chris
▴ 10
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 7 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 29 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
42 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Awards
• All
Popular Question
to
Johannes Rainer
★ 2.0k
Popular Question
to
Chris
▴ 10
Popular Question
to
Guido Hooiveld
★ 4.0k
Scholar
to
Michael Love
42k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Locations
• All
Greece,
12 minutes ago
Spain,
17 minutes ago
Sweden,
26 minutes ago
India,
27 minutes ago
Hong Kong,
38 minutes ago
Traffic: 688 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6