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Views
Votes
0
votes
4
replies
1.2k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
12 months ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
318
views
'ZygosityPredictor's dependency 'datastructures' missing in R 4.3.0
ZygosityPredictor
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 12 months ago by
Marc
• 0
0
votes
2
replies
605
views
msa Installation failed - please help
Install
msa
11 months ago
Ido
• 0
0
votes
0
replies
383
views
Illumina global SNP screeing array
illuminaHumanv3.db
arrays
11 months ago
DH
• 0
1
vote
0
replies
586
views
Fold values in Diffbind
DiffBind
11 months ago
bhandary.8590
▴ 20
0
votes
0
replies
438
views
blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules
WGCNA
consensus
11 months ago
Levi
• 0
0
votes
1
reply
808
views
SingleR error with multiple references
SingleR
updated 11 months ago by
Irish
• 0 • written 18 months ago by
carlo
• 0
0
votes
0
replies
302
views
Subsite info is possible for more studies
curatedMetagenomicData
11 months ago
Vitor Heidrich
• 0
0
votes
0
replies
408
views
Error while performing DEXseq
DEXSeq
11 months ago
vipul14
• 0
0
votes
0
replies
863
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
2
votes
4
replies
620
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
11 months ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
417
views
Title in dba.plotProfile
DiffBind
11 months ago
agata17
• 0
2
votes
1
reply
523
views
WGCNA: many over and under-expressed features in modules of a signed network
WGCNA
wgcna_package
updated 11 months ago by
andres.firrincieli
▴ 50 • written 11 months ago by
hesse.sebastian
▴ 10
0
votes
0
replies
277
views
alpha1 in SAFFRON method in onlineFDR package
onlineFDR
11 months ago
lgomeso
• 0
1
vote
2
replies
821
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Yijing
• 0
1
vote
4
replies
767
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 11 months ago by
Hervé Pagès
16k • written 11 months ago by
Manish
• 0
0
votes
0
replies
445
views
Positive beta-scores of essential genes in drug-treated cells
mageck
MAGeCKFlute
CrisprScreen
11 months ago
Monika
• 0
0
votes
0
replies
402
views
plotGOTermGraph connects all subtrees to the root node
GO.db
GOstats
11 months ago
RuBBiT0
▴ 10
0
votes
2
replies
542
views
No compilation on Windows y compilation on linux
Devel
PackageType
deve
12 months ago • updated 11 months ago
Franck RICHARD
• 0
1
vote
0
replies
489
views
WGCNA of two different cohorts study
DifferentialExpression
WGCNA
updated 11 months ago by
Michael Love
42k • written 11 months ago by
suphamon.j
▴ 20
0
votes
0
replies
423
views
mzTab-M in XCMS
xcms
mzTab-M
iterativehierarchicalprocessing
FBMN
11 months ago
Abrianna
• 0
0
votes
0
replies
629
views
MAGECK MLE design matrix
mageck
MAGeCKFlute
11 months ago
Monika
• 0
0
votes
0
replies
396
views
Recommendation sought for differential exon usage of a single gene
isofor
DEXSeq
DifferentialSplicing
11 months ago
nick_brittain55
• 0
0
votes
0
replies
547
views
what should be the input for SingleR() automatic cell type annotation?
SingleR
11 months ago
Yijing
• 0
0
votes
2
replies
1.7k
views
ChAMP pipeline error (champ.import)
software error
written 5.1 years ago by
mhebba
• 0
0
votes
2
replies
511
views
Recount3: PCR duplicates
pcrduplicates
recount3
multimappingreads
updated 11 months ago by
ivanrebecca230
• 0 • written 11 months ago by
seline.natalie
• 0
0
votes
1
reply
578
views
Recount3 data correspond to TCGA data
recount3
updated 11 months ago by
seline.natalie
• 0 • written 13 months ago by
kevin lee
• 0
0
votes
1
reply
450
views
Error with IsoformSwitchAnalyzer: analyzePFAM
IsoformSwitchAnalyzeR
11 months ago
Callum
• 0
0
votes
1
reply
454
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 11 months ago by
merve.sahn
• 0 • written 11 months ago by
ehamrud
• 0
0
votes
1
reply
463
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 11 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
1
reply
412
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 11 months ago by
merve.sahn
• 0 • written 13 months ago by
mlin18
• 0
0
votes
1
reply
804
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 11 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
1
reply
460
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
11 months ago
Esraa
• 0
0
votes
0
replies
452
views
Issues setting background in STRINGdb
STRINGdb
MSstats
11 months ago
samsiljee
• 0
0
votes
0
replies
445
views
Help with error running DiffBind
DiffBind
11 months ago
Chris
▴ 10
0
votes
0
replies
249
views
Can I plot values from LINCS level 4?
cmapR
11 months ago
Alexandre
• 0
0
votes
0
replies
283
views
Gene names not included on KEGGgraph plots
KEGGgraph
11 months ago
hilarius_bookbinder
• 0
1
vote
4
replies
1.1k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview
KEGG
Oryza_sativa
11 months ago
Jiyoung Lee
• 0
0
votes
1
reply
530
views
Gene enrichment analysis
analysis
R
GOfuncR
updated 11 months ago by
Lluís Revilla Sancho
▴ 730 • written 11 months ago by
Eliza
• 0
0
votes
0
replies
1.8k
views
what is the difference between iBAQ or LFQ?
Proteomics
DEP
limma
written 2.8 years ago by
barrypraveen
• 0
0
votes
6
replies
854
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
11 months ago
simone.tiberi
• 0
0
votes
1
reply
640
views
affy package and SNP arrays
crlmm
hapmapsnp6
genomewidesnp6Crlmm
affy
updated 10 months ago by
Kevin Blighe
★ 3.9k • written 10 months ago by
Vincent J. Carey, Jr.
6.7k
0
votes
6
replies
725
views
fastMNN reproducibility across machines when using Docker
batchelor
10 months ago
nils.eling
• 0
0
votes
0
replies
354
views
Csaw - WindowCount : Paired reads unexpectedly filtered out
windowCount
csaw
paired
10 months ago
julie.chevalier
• 0
0
votes
0
replies
402
views
How to go for Batch correction in RNA-seq expeiment conducted based on imbalanced Experimental design ?
RNASeqData
BatchEffect
sva
10 months ago
amnahsiddiqa
▴ 10
1
vote
5
replies
878
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 10 months ago by
Alejandro Reyes
★ 1.9k • written 10 months ago by
zhangpeng1202
• 0
0
votes
0
replies
509
views
Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2
modelmatrix
covariates
10 months ago
amir
• 0
0
votes
0
replies
11
views
Spam:
win rar password recovery software
ExonArray
splots
hgu133a2.db
10 months ago
roma
0
0
votes
0
replies
13
views
Spam:
ost to pst migration software
mgu74bv2cdf
NewWave
hgu133a2.db
10 months ago
roma
0
0
votes
0
replies
13
views
Spam:
7z password remover tool
mgu74bv2cdf
NewWave
hgu133a2.db
10 months ago
roma
0
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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