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Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by shepherl 4.1k
Can you try `BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene", type="source")`
Comment: Limma - Complex 2-way multi-level contrast with paired samples by Elizabeth • 0
Thank you very much, James! I wasn't aware of voomLmFit, and using it gave me more logical DEG. I really appreciate your time and effort!
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Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
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Answer: Limma - Complex 2-way multi-level contrast with paired samples
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Answer: Limma - Complex 2-way multi-level contrast with paired samples
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