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News:
BioC2023 abstract submission is now open!
presentation
BioC2023
Conference
community
Bioconductor
written 15 months ago by
Maria Doyle
▴ 70
0
votes
2
replies
914
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
13 months ago • updated 11 months ago
shepherl
3.9k
0
votes
0
replies
374
views
News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
11 months ago
shepherl
3.9k
0
votes
0
replies
486
views
News:
Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor
Community
BioC2023
12 months ago
Maria Doyle
▴ 70
1
vote
0
replies
595
views
News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
12 months ago
shepherl
3.9k
0
votes
0
replies
499
views
News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
12 months ago
shepherl
3.9k
0
votes
0
replies
559
views
News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Awards
Bioconductor
Bioc2023
Recognition
13 months ago • updated 12 months ago
shepherl
3.9k
0
votes
0
replies
556
views
News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
Recognition
12 months ago
shepherl
3.9k
0
votes
0
replies
518
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
13 months ago • updated 12 months ago
shepherl
3.9k
0
votes
0
replies
511
views
News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
12 months ago
info
▴ 10
0
votes
0
replies
1.1k
views
News:
Join the Technical Advisory Board
Bioconductor
News
Organization
12 months ago
Maria Doyle
▴ 70
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.2 years ago by
shepherl
3.9k
0
votes
0
replies
606
views
News:
RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
Event
Community
Training
12 months ago
Maria Doyle
▴ 70
0
votes
0
replies
523
views
News:
Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training
Bioconductor
Event
Community
Tutorial
12 months ago
Maria Doyle
▴ 70
0
votes
0
replies
613
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
13 months ago
shepherl
3.9k
1
vote
0
replies
514
views
News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training
Bioconductor
Event
Community
News
13 months ago
Maria Doyle
▴ 70
1
vote
0
replies
769
views
News:
Biological Data Science summer school 11-16 June in Brixen/Bressanone.
csama
13 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
527
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
13 months ago
Maria Doyle
▴ 70
0
votes
0
replies
500
views
News:
Bioconductor Release 3.16 Code Freeze
release
Release
Bioconductor
13 months ago
shepherl
3.9k
3
votes
6
replies
1.2k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 14 months ago by
darrelvanhoy
• 0 • written 14 months ago by
shepherl
3.9k
0
votes
0
replies
678
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
14 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
572
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
14 months ago
shepherl
3.9k
0
votes
0
replies
476
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
14 months ago
Maria Doyle
▴ 70
0
votes
0
replies
529
views
News:
Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics
R
Bioconductor
MassSpectrometry
14 months ago
info
▴ 10
0
votes
0
replies
484
views
News:
Bioconductor call for events!
Bioconductor
events
community
15 months ago
Maria Doyle
▴ 70
1
vote
0
replies
681
views
News:
Ensembl 109 has been released
ensembldb
15 months ago
Aleena
▴ 30
0
votes
2
replies
1.0k
views
News:
Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
modeling
statistics
ascona
Workshop
2.6 years ago • updated 15 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
573
views
News:
Seeking members for BioC2023 organizing committee
BioC2023
Bioconductor
community
16 months ago
Maria Doyle
▴ 70
0
votes
0
replies
559
views
News:
Seeking Outreachy interns and project proposals
Bioconductor
Outreachy
community
16 months ago
Maria Doyle
▴ 70
1
vote
0
replies
519
views
News:
Virtual talk “Model Misspecification in Microbiome Studies” by Amy D Willis
MicrobiomeData
Microbiome
17 months ago
Levi Waldron
★ 1.1k
2
votes
5
replies
3.4k
views
News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
ATACSeq
DiffBind
ComplexHeatmap
ChIPSeq
updated 17 months ago by
Junsik
• 0 • written 3.0 years ago by
Rory Stark
★ 5.2k
3
votes
0
replies
1.0k
views
News:
Save the Date Bioc2023!
Bioc2023
Conference
Bioconductor
18 months ago
shepherl
3.9k
0
votes
1
reply
749
views
News:
Bioconductor Scientific or Informatic Technology Advancement Award!
Recognition
Awards
Bioc2022
Bioconductor
written 2.1 years ago by
shepherl
3.9k
1
vote
2
replies
792
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 19 months ago by
Louisse
▴ 10
1
vote
2
replies
1.3k
views
News:
Registrations are now open for BioC Asia 2022
Asia
BioCAsia
Conferences
Events
News
19 months ago • updated 18 months ago
Peter Hickey
▴ 740
1
vote
0
replies
812
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
18 months ago
shepherl
3.9k
0
votes
0
replies
629
views
News:
Bioconductor Carpentries instructor training
teaching
Carpentries
18 months ago
Maria Doyle
▴ 70
0
votes
0
replies
579
views
News:
Last day to make commits before Release 3.16
Release
Devel
Bioconductor
release
devel
18 months ago
shepherl
3.9k
0
votes
2
replies
775
views
News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
19 months ago
shepherl
3.9k
1
vote
1
reply
596
views
News:
Bioconductor Hacktoberfest meetups!
meetup
hacktoberfest
19 months ago
Maria Doyle
▴ 70
0
votes
4
replies
1.2k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
2.1 years ago • updated 19 months ago
shepherl
3.9k
13
votes
3
replies
2.2k
views
News:
Bioconductor teaching week
teaching
Carpentries
written 21 months ago by
Laurent Gatto
1.6k
0
votes
0
replies
598
views
News:
Bioconductor Code of Conduct Committee Elections 2022
conduct
19 months ago
Laurent Gatto
1.6k
0
votes
0
replies
735
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
19 months ago
shepherl
3.9k
0
votes
0
replies
654
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
20 months ago
kayla.interdonato
▴ 160
4
votes
0
replies
668
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
20 months ago
shepherl
3.9k
1
vote
0
replies
824
views
News:
Ensembl 107 has been released
ensembldb
22 months ago
Aleena
▴ 30
0
votes
0
replies
706
views
News:
Introduction to genomic data analysis with R and Bioconductor in Heidelberg, 12-13 September 2022
Workshop
22 months ago
Laurent Gatto
1.6k
0
votes
0
replies
605
views
News:
Translation Hackathon (community event) announcement
event
translation
community
22 months ago
kozo.nishida
• 0
0
votes
0
replies
680
views
News:
Bioc2022 In-person attendance lottery deadline this Sunday
Registration
Bioc2022
Conference
2.0 years ago
shepherl
3.9k
495 results • Page
2 of 10
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Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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