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0
votes
0
replies
599
views
Multifactor analysis in DiffBind
DiffBind
multifactoranalysis
21 months ago
erbrocato
• 0
1
vote
4
replies
1.2k
views
EDAseq to normalise for both gene-length and GC-content
norma
EDASeq
EDA
Normalization
21 months ago
samuel.channon
• 0
0
votes
1
reply
777
views
Visium RNA
metaMSdata
written 21 months ago by
Karlison
• 0
1
vote
2
replies
1.3k
views
Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 21 months ago by
ATpoint
★ 5.0k • written 21 months ago by
maximilian.beikirch
• 0
0
votes
0
replies
434
views
DNAcopy segment function not reproducible even when setting seed
DNAcopy
21 months ago
BID
• 0
0
votes
2
replies
3.6k
views
Error in msaFun Cannot open input file. No alignment!
msa
written 21 months ago by
Kamil Slowikowski
▴ 30
0
votes
1
reply
754
views
Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 21 months ago by
Guido Hooiveld
★ 4.1k • written 21 months ago by
Julie
• 0
0
votes
1
reply
715
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 21 months ago by
Gordon Smyth
53k • written 21 months ago by
Gerhard Thallinger
▴ 180
0
votes
2
replies
953
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
21 months ago
Sam
▴ 10
0
votes
1
reply
803
views
Exact same results in Diffbind with different normalization methods
DiffBind
21 months ago
red_bricks
▴ 60
0
votes
0
replies
582
views
FELLA plotGraph function won't change the legend
FELLA
21 months ago
yuhang
• 0
0
votes
0
replies
495
views
medips-output
ngsReports
MEDIPS
21 months ago
Researcher
▴ 10
1
vote
1
reply
797
views
Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas
db0
updated 9 weeks ago by
teamardigen
• 0 • written 21 months ago by
bocsci11
▴ 10
0
votes
0
replies
428
views
The graphical interface of FELLA doesn't work
FELLA
21 months ago
yuhang
• 0
0
votes
0
replies
509
views
DEXSeq plot error
DEXSeq
DEXSeqNAvalues
DEXseq
21 months ago
jean-christophe.helbling
• 0
0
votes
0
replies
684
views
To analyze StringTie data using the isoformSwitchAnalyzeR package
IsoformSwitchAnalyzeR
22 months ago
Henry
• 0
0
votes
1
reply
1.2k
views
Rcpp compilation error
Release
Rcpp
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
Robert K. Bradley
▴ 40
0
votes
1
reply
822
views
Rain error: invalid annotation of time points
rain
updated 11 months ago by
Dominik
• 0 • written 22 months ago by
mpuli011
• 0
0
votes
0
replies
799
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
22 months ago
Felix
• 0
0
votes
0
replies
631
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray
normalize450K
TCGAbiolinks
Normalization
MethylationArrayData
22 months ago • updated 21 months ago
Giovanni Calice
▴ 160
0
votes
0
replies
1.1k
views
Error: grouping factors must have > 1 sampled level
Mast
mastR
MAST
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
Andrew
• 0
1
vote
0
replies
778
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag
SplicedAlignment
SGSeq
minimap2
22 months ago
jk
▴ 10
0
votes
0
replies
599
views
Can I combine collinear variables into a single value
BatchEffect
limma
22 months ago
Harrsha
• 0
0
votes
0
replies
1.1k
views
Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
22 months ago
vipul14
• 0
0
votes
0
replies
646
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R
ATACseqQC
22 months ago
danalvoronov
▴ 10
0
votes
0
replies
523
views
lfcSE
RGSEA
22 months ago
Gordon
• 0
0
votes
4
replies
1.1k
views
Interactions in batches of varying size with different number of replicates using limma
limma
RNASeq
DifferentialExpression
22 months ago
mperalc
• 0
0
votes
0
replies
637
views
Unclear exon-exon connection after RSubjunc() usage
IGV
Rsubjunc
Rsubread
22 months ago
thomas.heigl.ibk
• 0
0
votes
1
reply
783
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
sodiogoes
• 0
0
votes
6
replies
2.5k
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 21 months ago by
qianyi13
• 0 • written 22 months ago by
Pavel
• 0
0
votes
2
replies
864
views
problem in installing the new version of bioconductor
ANCOMBC
updated 22 months ago by
shepherl
4.2k • written 22 months ago by
Maryam
• 0
0
votes
0
replies
564
views
Comparing the effects of a condition over time in two seperate tissues
MAST
22 months ago
Dillon
• 0
0
votes
4
replies
2.3k
views
Installation problem of rtracklayer on Bioconductor version 3.19
newpackage
rtracklayer
updated 22 months ago by
shepherl
4.2k • written 22 months ago by
Lucille
• 0
0
votes
3
replies
806
views
problems updating package
TrajectoryGeometry
22 months ago
michael.shapiro
• 0
0
votes
0
replies
733
views
how to solve this error?
ChAMPdata
ChAMP
22 months ago
Meghana
• 0
1
vote
1
reply
997
views
FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 21 months ago by
SamGG
▴ 360 • written 22 months ago by
jarod
▴ 30
0
votes
0
replies
678
views
ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
22 months ago
mat149
▴ 80
0
votes
0
replies
1.2k
views
GDC slides download
TCGAbiolinks
22 months ago
jain72744
• 0
0
votes
0
replies
781
views
Differential expression analysis between different species
DEG
RNASeqData
DifferentialExpression
SCBN
RNASeq
22 months ago
Abril
• 0
0
votes
4
replies
1.4k
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks
Survival
updated 22 months ago by
Lluís Revilla Sancho
▴ 760 • written 22 months ago by
tirordep
• 0
0
votes
1
reply
976
views
"Counts" in enrichGO
GSEABase
updated 22 months ago by
Tyler Sagendorf
▴ 10 • written 22 months ago by
Matthew
• 0
0
votes
1
reply
1.3k
views
WGCNA | plotDendroAndColors ERROR
plotDendroAndColor
WGCNA
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
Priya
• 0
2
votes
15
replies
2.7k
views
Problems with enrichGO
clusterProfiler
enrichGO
updated 22 months ago by
Michael Love
43k • written 22 months ago by
cinzia.spagnoli
• 0
0
votes
0
replies
832
views
Best method for annotating distal peaks
ChIPSeq
annotation
ChIPpeakAnno
22 months ago
nilanjanamani88
• 0
0
votes
3
replies
1.7k
views
Unable to install clusterProfiler
clusterProfiler
updated 22 months ago by
Perry
• 0 • written 23 months ago by
harsh
• 0
0
votes
0
replies
590
views
rain: Error in peakl[[x]] : subscript out of bounds
rain
23 months ago
mata
• 0
1
vote
5
replies
2.3k
views
BiomaRt download data error
biomaRt
updated 23 months ago by
Mike Smith
★ 6.6k • written 23 months ago by
Max Bone
• 0
0
votes
0
replies
500
views
addcrispraiscores - crisprverse not working
crisprDesign
23 months ago
jimjacob08
• 0
0
votes
0
replies
572
views
Error reading bam files with getCounts after updating R
chromVAR
chrom
updated 23 months ago by
James W. MacDonald
68k • written 23 months ago by
tsourkas
• 0
0
votes
2
replies
782
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
23 months ago • updated 11 months ago
User3088
• 0
1,000 results • Page
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Answer: blockwiseModule crashes in the end and doesn't generate modules
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Queria compartir mi experiencia con [https://jugabet.cl/football/live/1][1] . Esta seccion ofrece cobertura en vivo de futbol, con marcado…
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Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
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If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
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