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3
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5
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why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 2.3 years ago by 6.7k • written 2.3 years ago by ▴ 20
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
2.3 years ago Maria Doyle ▴ 100
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0
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1.1k
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
2.3 years ago info ▴ 10
0
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5
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1.7k
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What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 2.3 years ago by 4.2k • written 2.3 years ago by • 0
1
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0
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714
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News: Bioconductor Website Redesign - We Need Your Input!
Bioconductor Website
2.4 years ago shepherl 4.2k
0
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1
reply
776
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BiocManager Package installs
Bioconductor
updated 2.4 years ago by 4.2k • written 2.4 years ago by • 0
0
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2
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1.5k
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News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
2.6 years ago • updated 2.4 years ago shepherl 4.2k
0
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0
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643
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News: May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor Awards Bioc2023 Recognition
2.4 years ago shepherl 4.2k
0
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6
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1.5k
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Merge 2 accounts, or delete 1 account.
Bioconductor ALL
2.4 years ago simone.tiberi • 0
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0
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846
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
2.5 years ago Maria Doyle ▴ 100
0
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4
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1.4k
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problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
2.5 years ago sreeshmaraj72 • 0
1
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0
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953
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News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
2.5 years ago shepherl 4.2k
0
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0
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877
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News: Junior Developer or New Package Developer Award
Bioconductor Recognition Bioc2023 Awards
2.5 years ago shepherl 4.2k
0
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0
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998
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
2.5 years ago shepherl 4.2k
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979
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News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
2.5 years ago shepherl 4.2k
0
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0
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857
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News: Nominations for Bioconductor 2023 Awards!
Awards Bioconductor Bioc2023 Recognition
2.6 years ago • updated 2.5 years ago shepherl 4.2k
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0
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1.5k
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News: Join the Technical Advisory Board
Bioconductor News Organization
2.5 years ago Maria Doyle ▴ 100
0
votes
1
reply
1.6k
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Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 2.5 years ago by ★ 3.6k • written 2.5 years ago by • 0
0
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0
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1.0k
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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
2.5 years ago Maria Doyle ▴ 100
0
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0
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1.1k
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package ‘riboSeqR’ is not available for this version of R
Bioconductor riboSeqR
2.5 years ago Javier • 0
0
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0
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956
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training Bioconductor Event Community Tutorial
2.5 years ago Maria Doyle ▴ 100
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0
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1.2k
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News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
2.5 years ago shepherl 4.2k
1
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0
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926
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training Bioconductor Event Community News
2.5 years ago Maria Doyle ▴ 100
0
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2
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1.4k
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GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 2.5 years ago by • 0 • written 2.5 years ago by • 0
0
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1
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5.6k
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package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
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0
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798
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How to extract the counts for non-split reads from paired end RNA-seq data?
rsubread featurecounts Bioconductor countsextraction
2.6 years ago barrypraveen • 0
0
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0
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846
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News: Bioconductor Release 3.16 Code Freeze
release Release Bioconductor
2.6 years ago shepherl 4.2k
1
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3
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2.3k
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how to add an enrichment score to a kegg pathway enrichment analysis?
KEGG clusterProfiler Bioconductor
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by ▴ 10
0
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1
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1.4k
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Specific versions of packages
Bioconductor
updated 2.6 years ago by ★ 6.6k • written 2.6 years ago by ▴ 90
0
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1
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1.8k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 15 months ago by • 0 • written 2.8 years ago by ▴ 100
0
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0
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1.1k
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News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
2.7 years ago • updated 2.6 years ago shepherl 4.2k
3
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6
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1.8k
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News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 2.6 years ago by • 0 • written 2.7 years ago by 4.2k
2
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5
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edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 2.7 years ago by • 0
0
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0
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997
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News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
2.7 years ago info ▴ 10
0
votes
0
replies
823
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News: Bioconductor call for events!
Bioconductor events community
2.7 years ago Maria Doyle ▴ 100
0
votes
2
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4.6k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 2.7 years ago by • 0
0
votes
2
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989
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Bioconductor API or dataset
Bioconductor Packages Dataset API
updated 2.7 years ago by 700 • written 2.7 years ago by • 0
2
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9
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2.1k
views
mas5calls function doesn't work; mirna40cdf problem
R Bioconductor mas5calls
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
1
reply
996
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 2.8 years ago by • 0 • written 3.1 years ago by ▴ 10
1
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1
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1.1k
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 2.9 years ago by 4.2k
0
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0
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919
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News: Seeking members for BioC2023 organizing committee
BioC2023 Bioconductor community
2.8 years ago Maria Doyle ▴ 100
0
votes
0
replies
965
views
News: Seeking Outreachy interns and project proposals
Bioconductor Outreachy community
2.8 years ago Maria Doyle ▴ 100
0
votes
2
replies
6.6k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
2
votes
2
replies
1.0k
views
Inccorect group number in DGEList
edgeR Bioconductor Dseq2 dgelist
updated 2.9 years ago by 53k • written 2.9 years ago by • 0
0
votes
1
reply
1.4k
views
DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2 version3.16 installation bioconductor GenomicRange
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
votes
2
replies
1.4k
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 2.9 years ago by • 0
0
votes
3
replies
2.8k
views
Cannot download flowUtils package from Bioconductor 3.16
Bioconductor flowUtils
updated 2.9 years ago by ★ 6.6k • written 2.9 years ago by • 0
1
vote
7
replies
2.4k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 2.9 years ago by 4.2k • written 2.9 years ago by • 0
2
votes
8
replies
2.8k
views
error in getting entrez ids for gene names
Bioconductor
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
3
votes
0
replies
1.5k
views
News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
3.0 years ago shepherl 4.2k
906 results • Page 4 of 19
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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