Showing : ChIPQC • reset
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Unevaluated error in ChIPQC combined with BiocParallel
BiocParallel ChIPQC
written 5 weeks ago by • 0
2
votes
1
reply
1.9k
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DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 2.2 years ago by ★ 5.2k • written 2.2 years ago by • 0
4
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13
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4.4k
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BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 22 months ago by ★ 5.2k • written 2.4 years ago by • 0
0
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7
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2.2k
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CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 2.3 years ago by ▴ 40 • written 4.6 years ago by ▴ 10
1
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2
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1.2k
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Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
2.3 years ago etiennedanis • 0
0
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3
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1.1k
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ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 3.3 years ago by • 0
0
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1
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1.1k
views
saving png images and X11
ChipQC
updated 2.7 years ago by ★ 4.5k • written 2.7 years ago by ▴ 670
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0
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959
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Generate a custom annotation for ChIPQC
ChIPQC
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
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2
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1.1k
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ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
2.8 years ago Bogdan ▴ 670
3
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6
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15k
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Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 2.1 years ago by • 0 • written 8.2 years ago by ▴ 10
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0
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644
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ChIPQC: Theme
ChIPQC
3.3 years ago etiennedanis • 0
1
vote
2
replies
972
views
ChIPQC: log2 or log10?
ChIPQC
3.3 years ago etiennedanis • 0
3
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1
reply
1.1k
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ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
3.5 years ago Jonah ▴ 20
0
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2
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1.3k
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ChIPQC error in previously working code (BAM association error)
chipqc
updated 24 months ago by • 0 • written 3.6 years ago by ▴ 50
2
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3
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2.0k
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ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 6 months ago by • 0 • written 4.1 years ago by ▴ 60
2
votes
7
replies
2.3k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 10 months ago by • 0 • written 4.2 years ago by • 0
0
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2
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1.6k
views
Error while running ChIPQC
ChIPQC
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
1
vote
3
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3.2k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 4.0 years ago by ★ 5.2k • written 6.7 years ago by ▴ 10
0
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0
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1.4k
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ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
4.1 years ago lida • 0
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0
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855
views
ChIPQC cross-coverage plot
chipqc chip-seq
4.6 years ago tuteja.reetu • 0
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0
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734
views
Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
4.7 years ago mudithekanayake • 0
0
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1
reply
909
views
ChIPQC produces empty cross correlation plot
chipqc cross correlation
4.8 years ago nikhil.ashok.joshi • 0
0
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1
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1.0k
views
ChIPQC: Error in summary.factor
ChIPQC
updated 5.0 years ago by • 0 • written 5.1 years ago by • 0
0
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0
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850
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc chipseq ChIPQC
5.2 years ago laura.mannarino ▴ 20
1
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1
reply
1.3k
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ChIPQC: issues with report generation and QC metrics
ChIPQC software error
5.2 years ago ryleehackley • 0
2
votes
2
replies
1.5k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 5.3 years ago by ▴ 20 • written 5.7 years ago by ▴ 10
3
votes
6
replies
2.0k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 30
0
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1
reply
1.6k
views
ChIPQC BiocParallel errors
ChIPQC ChIPQC error BiocParallel
5.4 years ago minervajunjun • 0
2
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4
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3.4k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 3.3 years ago by • 0 • written 5.4 years ago by ▴ 20
0
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1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.5 years ago by • 0 • written 5.5 years ago by • 0
0
votes
1
reply
981
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.8 years ago by ▴ 420 • written 5.8 years ago by • 0
0
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4
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2.0k
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ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq ChIPQC
updated 5.8 years ago by 67k • written 5.8 years ago by ▴ 10
0
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6
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1.7k
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ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
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3
replies
1.4k
views
ChIPQC ERROR with "subscript out of bounds"
chipqc
5.9 years ago Chevy Xu • 0
2
votes
6
replies
2.5k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by ▴ 10
3
votes
5
replies
2.8k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
6.2 years ago molly_the_minotaur ▴ 30
0
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0
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896
views
ChIPQC Error in names(res) <- nms
chipqc
6.2 years ago gavrielmatt ▴ 30
1
vote
7
replies
3.1k
views
ChipQC not loading files
ChipQC diffbind
updated 6.2 years ago by ▴ 420 • written 6.3 years ago by • 0
0
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2
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1.1k
views
ChipQCreport coverage plot failure?
ChipQC chipqcreport
6.3 years ago tapio.envall • 0
0
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4
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2.5k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
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0
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1.3k
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ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.7 years ago ZheFrench ▴ 60
0
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0
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1.1k
views
ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
6.9 years ago ew152 • 0
0
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0
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1.3k
views
ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
7.0 years ago nbkingsley • 0
5
votes
11
replies
2.4k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 7.0 years ago by ▴ 420 • written 7.0 years ago by ▴ 10
0
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1
reply
1.7k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 7.1 years ago by ▴ 420 • written 7.2 years ago by ▴ 20
0
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4
replies
1.8k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
7.2 years ago jared.andrews07 ▴ 30
0
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0
replies
981
views
ChIPQC stops at chr3 for calculating shift
chipqc
7.2 years ago psudyant • 0
2
votes
5
replies
2.1k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 7.2 years ago by ★ 5.2k • written 7.2 years ago by ▴ 60
3
votes
12
replies
4.2k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 7.2 years ago by ▴ 420 • written 9.7 years ago by • 0
0
votes
3
replies
1.5k
views
ChiPQC run time error
ChiPQC
updated 7.3 years ago by ▴ 420 • written 7.3 years ago by • 0
50 results • Page 1 of 1
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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction by abadgerw • 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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