Showing : ChipQC • reset
0
votes
1
reply
214
views
Unevaluated error in ChIPQC combined with BiocParallel
BiocParallel ChIPQC
written 3 months ago by • 0
2
votes
1
reply
1.9k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 2.3 years ago by ★ 5.2k • written 2.4 years ago by • 0
4
votes
13
replies
4.6k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 2.0 years ago by ★ 5.2k • written 2.6 years ago by • 0
0
votes
7
replies
2.3k
views
CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 2.4 years ago by ▴ 40 • written 4.7 years ago by ▴ 10
1
vote
2
replies
1.2k
views
Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
2.5 years ago • updated 2.4 years ago etiennedanis • 0
0
votes
3
replies
1.1k
views
ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 3.5 years ago by • 0
0
votes
1
reply
1.2k
views
saving png images and X11
ChipQC
updated 2.9 years ago by ★ 4.6k • written 2.9 years ago by ▴ 670
0
votes
0
replies
1.0k
views
Generate a custom annotation for ChIPQC
ChIPQC
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
0
votes
2
replies
1.1k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
2.9 years ago Bogdan ▴ 670
3
votes
6
replies
16k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 2.3 years ago by • 0 • written 8.4 years ago by ▴ 10
0
votes
0
replies
672
views
ChIPQC: Theme
ChIPQC
3.5 years ago etiennedanis • 0
1
vote
2
replies
1.0k
views
ChIPQC: log2 or log10?
ChIPQC
3.5 years ago etiennedanis • 0
3
votes
1
reply
1.2k
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
3.6 years ago Jonah ▴ 20
0
votes
2
replies
1.4k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 2.1 years ago by • 0 • written 3.7 years ago by ▴ 50
2
votes
3
replies
2.1k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 8 months ago by • 0 • written 4.3 years ago by ▴ 60
2
votes
7
replies
2.3k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 12 months ago by • 0 • written 4.3 years ago by • 0
0
votes
2
replies
1.7k
views
Error while running ChIPQC
ChIPQC
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
1
vote
3
replies
3.3k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 4.2 years ago by ★ 5.2k • written 6.9 years ago by ▴ 10
0
votes
0
replies
1.4k
views
ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
4.2 years ago lida • 0
0
votes
0
replies
886
views
ChIPQC cross-coverage plot
chipqc chip-seq
4.7 years ago tuteja.reetu • 0
0
votes
0
replies
769
views
Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
4.9 years ago mudithekanayake • 0
0
votes
1
reply
944
views
ChIPQC produces empty cross correlation plot
chipqc cross correlation
5.0 years ago nikhil.ashok.joshi • 0
0
votes
1
reply
1.1k
views
ChIPQC: Error in summary.factor
ChIPQC
updated 5.1 years ago by • 0 • written 5.3 years ago by • 0
0
votes
0
replies
882
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc chipseq ChIPQC
5.3 years ago laura.mannarino ▴ 20
1
vote
1
reply
1.4k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
5.3 years ago ryleehackley • 0
2
votes
2
replies
1.6k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 5.4 years ago by ▴ 20 • written 5.9 years ago by ▴ 10
3
votes
6
replies
2.1k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 30
0
votes
1
reply
1.7k
views
ChIPQC BiocParallel errors
ChIPQC ChIPQC error BiocParallel
5.5 years ago minervajunjun • 0
2
votes
4
replies
3.5k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 3.4 years ago by • 0 • written 5.6 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.7 years ago by • 0 • written 5.7 years ago by • 0
0
votes
1
reply
1.0k
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.9 years ago by ▴ 420 • written 6.0 years ago by • 0
0
votes
4
replies
2.1k
views
ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq ChIPQC
updated 5.9 years ago by 67k • written 5.9 years ago by ▴ 10
0
votes
6
replies
1.8k
views
ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
0
votes
3
replies
1.5k
views
ChIPQC ERROR with "subscript out of bounds"
chipqc
6.0 years ago Chevy Xu • 0
2
votes
6
replies
2.6k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 6.3 years ago by ▴ 420 • written 6.3 years ago by ▴ 10
3
votes
5
replies
2.9k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
6.3 years ago molly_the_minotaur ▴ 30
0
votes
0
replies
929
views
ChIPQC Error in names(res) <- nms
chipqc
6.4 years ago gavrielmatt ▴ 30
1
vote
7
replies
3.2k
views
ChipQC not loading files
ChipQC diffbind
updated 6.4 years ago by ▴ 420 • written 6.4 years ago by • 0
0
votes
2
replies
1.2k
views
ChipQCreport coverage plot failure?
ChipQC chipqcreport
6.4 years ago tapio.envall • 0
0
votes
4
replies
2.5k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
votes
0
replies
1.3k
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.9 years ago ZheFrench ▴ 60
0
votes
0
replies
1.2k
views
ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
7.1 years ago ew152 • 0
0
votes
0
replies
1.4k
views
ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
7.1 years ago nbkingsley • 0
5
votes
11
replies
2.5k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 7.2 years ago by ▴ 420 • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 7.3 years ago by ▴ 420 • written 7.3 years ago by ▴ 20
0
votes
4
replies
1.9k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
7.4 years ago • updated 7.3 years ago jared.andrews07 ▴ 30
0
votes
0
replies
1.0k
views
ChIPQC stops at chr3 for calculating shift
chipqc
7.3 years ago psudyant • 0
2
votes
5
replies
2.1k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 7.3 years ago by ★ 5.2k • written 7.4 years ago by ▴ 60
3
votes
12
replies
4.3k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 7.4 years ago by ▴ 420 • written 9.8 years ago by • 0
0
votes
3
replies
1.5k
views
ChiPQC run time error
ChiPQC
updated 7.5 years ago by ▴ 420 • written 7.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to linouhao ▴ 20
Popular Question to spg • 0
Popular Question to otieno43 • 0
Popular Question to svlachavas ▴ 840
Locations • All
United States, 2 minutes ago
Germany/Heidelberg/German Cancer Research Center, 23 minutes ago
Kazakhstan, 30 minutes ago
United States, 51 minutes ago
United States, 1 hour ago
Traffic: 718 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6