Showing : Chippeakanno • reset
0
votes
3
replies
767
views
ChIPpeakAnno can not load data
genomes ChIPpeakAnno
written 12 months ago by • 0
0
votes
0
replies
860
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
16 months ago Raghad • 0
0
votes
0
replies
755
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
19 months ago nilanjanamani88 • 0
1
vote
5
replies
1.6k
views
ChIPpeakAnno annotatePeakInBatch output
ChIPpeakAnno
23 months ago ilaria.maurizio • 0
0
votes
0
replies
685
views
Why there are two pfms in the result of oligoSummary function of ChIPpeakAnno package?
ChIPpeakAnno ChIPSeq MotifDiscovery
24 months ago franciscrick41 • 0
3
votes
7
replies
1.7k
views
Genes in open chromatin region
ChIPpeakAnno DiffBind
written 2.0 years ago by ▴ 20
2
votes
14
replies
2.3k
views
ChIPpeakAnno: S.lycopersicum annotation missing
ChIPpeakAnno ChIPSeq
updated 2.1 years ago by 68k • written 2.1 years ago by ▴ 10
0
votes
1
reply
894
views
genomeStyles error in ChIPpeakAnno
Chippeakanno ChIPpeakAnno
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
votes
2
replies
1.3k
views
annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 2.4 years ago by ▴ 70 • written 2.4 years ago by ▴ 140
9
votes
16
replies
2.9k
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
2.4 years ago Chris ▴ 20
1
vote
2
replies
1.1k
views
How to map geneIds to ENTREZIDs
Xenopus_laevis ChIPpeakAnno
2.6 years ago stacy.genovese • 0
1
vote
1
reply
959
views
Interpretation of $vennCounts output "Others"
ChIPpeakAnno
updated 2.8 years ago by ★ 1.3k • written 2.8 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Empty matrix
ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene
2.9 years ago michela ▴ 20
0
votes
1
reply
951
views
Trying to understand the `select` option in `annotatePeakInBatch` function of `ChIPpeakAnno` package.
ChIPpeakAnno
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
1
vote
1
reply
1.0k
views
How can I do pathway analysis by ChipPeakAnno package?
ChIPpeakAnno
3.1 years ago mehdi • 0
0
votes
1
reply
1.1k
views
AssignChromosomeRegion not working in Rstudio 4.2
ChIPpeakAnno ChIPSeq
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by • 0
0
votes
1
reply
1.3k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.4 years ago by ▴ 70 • written 3.5 years ago by ▴ 670
1
vote
2
replies
2.3k
views
another problem when converting bed to granges using togranges
ChIPpeakAnno
3.6 years ago Bakhtiyar • 0
0
votes
2
replies
1.4k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
3.6 years ago Bogdan ▴ 670
2
votes
6
replies
3.7k
views
Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 3.6 years ago by ▴ 70 • written 3.6 years ago by • 0
0
votes
0
replies
1.1k
views
findOverlapsOfPeaks - peaklist of connectedPeaks="min:
findOverlapsOfPeaks ChIPpeakAnno chipseq
3.8 years ago Nadav • 0
1
vote
2
replies
3.4k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
3.9 years ago lexi.kellington • 0
0
votes
4
replies
2.7k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"])
ChIPpeakAnno
3.9 years ago Tongjun • 0
1
vote
6
replies
2.3k
views
Annotation by CHIPeakAnno tool
ChIPpeakAnno
4.2 years ago Arunima ▴ 10
1
vote
3
replies
1.3k
views
genomicElementDistribution function not found
ChIPpeakAnno
updated 4.2 years ago by ★ 4.3k • written 4.2 years ago by ▴ 10
2
votes
2
replies
1.8k
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
4.5 years ago Lucky • 0
7
votes
9
replies
2.9k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 5.1 years ago by ★ 4.3k • written 5.1 years ago by ▴ 140
2
votes
2
replies
1.2k
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
5.1 years ago C T ▴ 140
1
vote
2
replies
1.3k
views
How to get 'shortest' distance with ChIPpeakAnno::binOverFeature
ChIPpeakAnno
6.1 years ago liruiradiant • 0
0
votes
1
reply
1.5k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 4.4 years ago by • 0 • written 6.4 years ago by • 0
0
votes
4
replies
1.8k
views
chippeakanno file reading error
ChiPpeakAnno
6.5 years ago saddamhusain77 • 0
1
vote
6
replies
1.9k
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
6.6 years ago ngs06 ▴ 20
2
votes
10
replies
4.2k
views
ChIPpeakAnno, MACS format annotation
bioconductor ChIPpeakAnno
updated 6.7 years ago by ★ 4.3k • written 8.5 years ago by ▴ 30
0
votes
7
replies
2.2k
views
ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
chippeakanno chipseq R
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
3
votes
6
replies
2.2k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
7.2 years ago 94133 • 0
0
votes
1
reply
1.5k
views
Error creating pool for permutation test (PeakPermTest)
permutation pool chippeakanno
7.2 years ago ge2sasag • 0
1
vote
1
reply
1.3k
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
2
votes
2
replies
2.1k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 7.6 years ago by ★ 6.6k • written 7.6 years ago by ▴ 70
0
votes
3
replies
1.8k
views
integer overflow in ChIPpeakAnno assignChromosomeRegion
ChIPpeakAnno assignChromosomeRegion
updated 7.6 years ago by ★ 4.3k • written 7.6 years ago by ▴ 740
1
vote
1
reply
1.3k
views
Custom regions in assignChromosomeRegion?
chippeakanno
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by • 0
1
vote
2
replies
3.0k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
7.8 years ago inzirio ▴ 10
1
vote
4
replies
1.9k
views
ChIPpeakAnno binOverGene error
chippeakanno binOverGene
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
0
votes
1
reply
1.5k
views
ChIPpeakAnno to find peaks nearest to miRNA
ChIPpeakAnno ChIPpeakAnno
updated 7.9 years ago by • 0 • written 12.8 years ago by ▴ 120
2
votes
3
replies
3.2k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 7.9 years ago by • 0 • written 9.9 years ago by • 0
0
votes
1
reply
1.7k
views
featureAlignedSignal() error: deparse(sig): object 'sig' not found.
bioconductor chippeakanno featureAlignedDistribution featureAlignedSignal
updated 7.9 years ago by • 0 • written 9.0 years ago by • 0
0
votes
1
reply
1.3k
views
Help for ChIP script !! Error message while installing packages
annotation chippeakanno
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
5
votes
4
replies
5.8k
views
What are out-of-bound ranges? Is it necessary to get rid of them?
r ChIPpeakAnno
8.4 years ago • updated 8.2 years ago salamandra ▴ 20
4
votes
3
replies
1.7k
views
Annotation Database for ChIPpeakAnno
ChIPpeakAnno
updated 8.3 years ago by ★ 1.3k • written 8.3 years ago by ▴ 110
1
vote
1
reply
1.5k
views
Regarding ChIPpeakAnno installation error
chippeakanno
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 10
0
votes
3
replies
3.1k
views
ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is different than output of ol1$overlappingPeaks
chippeakanno
updated 8.5 years ago by ★ 1.3k • written 8.5 years ago by • 0
179 results • Page 1 of 4
Recent ...
Replies
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexecutor4 • 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Guangchuang Yu ★ 1.2k
Popular Question to Paulito • 0
Popular Question to geneprophet • 0
Popular Question to Hervé Pagès 16k
Locations • All
The city by the bay, 1 hour ago
Pittsburgh, United States, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Italy, 3 hours ago
Traffic: 899 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6