Showing : ClusterProfiler • reset
3
votes
2
replies
14k
views
ENSEMBL to ENTREZ ID
clusterProfiler
3.3 years ago martacrespi7 ▴ 10
1
vote
1
reply
1.7k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.3 years ago by ★ 4.1k • written 3.3 years ago by ▴ 30
1
vote
3
replies
3.1k
views
enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
updated 20 months ago by • 0 • written 3.3 years ago by • 0
2
votes
1
reply
3.9k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
3.4 years ago Lucía ▴ 30
0
votes
5
replies
3.5k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 3.4 years ago by 68k • written 3.4 years ago by ▴ 30
0
votes
0
replies
959
views
Not obtaining significant Gene Ontology Biological Process hits
clusterProfiler
3.4 years ago Jordan • 0
0
votes
13
replies
4.5k
views
EnrichGO not working with db created from annotationhub
clusterProfiler AnnotationHubData GO
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by ▴ 30
1
vote
2
replies
1.6k
views
cluster profiler
clusterProfiler
3.4 years ago • updated 3.3 years ago michaelR • 0
1
vote
1
reply
995
views
Meaning of brown-coloured nodes in the graph produced by the ReactomePA viewPathway() function.
clusterProfiler ReactomePA
updated 3.5 years ago by ▴ 780 • written 3.5 years ago by ▴ 20
2
votes
1
reply
3.5k
views
enrichKEGG
clusterProfiler enrichKEGG
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by • 0
1
vote
5
replies
3.7k
views
Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
clusterProfiler r
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by • 0
0
votes
2
replies
6.3k
views
ClusterProfiler dotplot mapping fold change to colour of dots
clusterProfiler
updated 2.9 years ago by • 0 • written 3.5 years ago by • 0
0
votes
2
replies
2.4k
views
Plot terms with a NES < 0 GSEA results from gseGO
clusterProfiler
updated 3.5 years ago by ★ 1.2k • written 4.8 years ago by • 0
0
votes
1
reply
1.6k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.5 years ago by • 0 • written 3.6 years ago by ▴ 10
5
votes
13
replies
6.6k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.6 years ago by ▴ 50 • written 3.6 years ago by • 0
0
votes
1
reply
3.4k
views
Filtering Clusterprofiler Result Object
clusterProfiler
updated 3.7 years ago by ★ 4.1k • written 3.7 years ago by ▴ 10
0
votes
1
reply
2.5k
views
Error in install package
clusterProfiler
updated 3.8 years ago by 4.2k • written 3.8 years ago by • 0
2
votes
11
replies
11k
views
ClusterProfiler enrichGO function leads to different enrichment results in different computers, while the code and gene list keep same
clusterProfiler
3.8 years ago liuzhy ▴ 10
0
votes
1
reply
1.3k
views
Not obtaining specified GO BPs in compareCluster dotplot
clusterProfiler
updated 3.8 years ago by ★ 4.1k • written 3.8 years ago by • 0
6
votes
4
replies
11k
views
what the test method for enrichGO in clusterProfiler?
clusterProfiler
3.8 years ago xiaofeiwang18266 ▴ 60
2
votes
1
reply
2.1k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
3.9 years ago fatimaruizdelabastida ▴ 10
1
vote
2
replies
5.0k
views
cnetplot with enrichKEGG results
clusterProfiler enrichKEGG cnetplot
3.9 years ago fatimaruizdelabastida ▴ 10
0
votes
5
replies
14k
views
Cannot install clusterProfiler
clusterprofiler biocinstaller
updated 3.9 years ago by ▴ 10 • written 7.4 years ago by • 0
0
votes
2
replies
2.4k
views
Too many genes in GO term after enrichGO
clusterProfiler enrichGO clusterPro
3.9 years ago Question1 • 0
2
votes
2
replies
4.9k
views
Is it possible to coerce dataframe to enrichResult class in clusterProfiler?
clusterprofiler
updated 3.9 years ago by • 0 • written 8.8 years ago by ▴ 40
2
votes
2
replies
1.8k
views
Using clusterProfiler for depletion analysis
clusterProfiler enrichGO
3.9 years ago samsiljee • 0
3
votes
2
replies
5.0k
views
gseGO input list
clusterProfiler
3.9 years ago leakerb • 0
1
vote
0
replies
2.1k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
4.0 years ago makrez ▴ 10
0
votes
2
replies
2.0k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.0 years ago Adarsh • 0
0
votes
1
reply
3.4k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
4.0 years ago Yang • 0
1
vote
0
replies
1.9k
views
documentation on clusterProfiler output
clusterProfiler KEGG
4.0 years ago rafaela.perez ▴ 10
8
votes
9
replies
11k
views
Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_from_pkg’ is not exported by 'namespace:rvcheck'
get_fun_from_pkg clusterProfiler rvcheck
updated 3.8 years ago by • 0 • written 4.0 years ago by • 0
0
votes
1
reply
2.0k
views
enrichGO analysis
clusterProfiler
updated 4.1 years ago by ★ 4.1k • written 4.1 years ago by • 0
1
vote
4
replies
7.2k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.5 years ago by • 0 • written 4.2 years ago by • 0
1
vote
2
replies
2.6k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 4.4 years ago by ★ 4.1k • written 4.4 years ago by • 0
0
votes
1
reply
12k
views
"No genes can be mapped...." using enrichGO in clusterProfiler
R TAIR clusterProfiler enrichGO Arabidopsis
updated 4.4 years ago by ★ 4.1k • written 4.4 years ago by • 0
0
votes
0
replies
2.0k
views
Error: package or namespace load failed for ‘clusterProfiler’: object 'integer64' is not exported by 'namespace:bit64'
clusterProfiler
4.5 years ago 845133099 • 0
0
votes
6
replies
4.8k
views
clusterProfiler: different runs return different results for gse functions
clusterprofiler
updated 4.5 years ago by ▴ 10 • written 8.1 years ago by • 0
1
vote
2
replies
3.3k
views
ClusterProfiler KEGG Gene Set Enrichment Analysis
clusterProfiler KEGGGeneSetEnrichmentAnalysis
4.7 years ago • updated 4.6 years ago iidaL • 0
3
votes
11
replies
7.4k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler AnnotationHub GO uniprot
updated 20 months ago by ★ 4.1k • written 4.7 years ago by • 0
0
votes
2
replies
4.2k
views
gene set enrichment analysis with enrichKEGG (clusterProfiler) returns very few enriched pathways
clusterProfiler KEGG GSEA
4.7 years ago Emilia ▴ 40
2
votes
3
replies
2.6k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.7 years ago by 68k • written 4.7 years ago by ▴ 30
0
votes
1
reply
6.6k
views
Having error with clusterProfiler::bitr
clusterProfiler
updated 4.7 years ago by ★ 4.1k • written 4.7 years ago by • 0
0
votes
2
replies
3.7k
views
Error with package clusterProfiler: "Error in abs(stats) : non-numeric argument to mathematical function"
Bioconductor BIOCOND clusterProfiler
updated 3.3 years ago by • 0 • written 4.8 years ago by • 0
0
votes
0
replies
560
views
Unique K number set or all K number set?
clusterProfiler
4.8 years ago XM • 0
2
votes
4
replies
4.3k
views
I want to make a geneList for clusterProfiler analysis but I get "error in do.call( cbind lapply(x is.na )) variable names are limited to 10000 bytes"
clusterProfiler
4.8 years ago Emilia ▴ 40
0
votes
1
reply
1.8k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.8 years ago by ▴ 40 • written 4.8 years ago by • 0
0
votes
0
replies
860
views
Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
4.9 years ago paun_bio • 0
0
votes
1
reply
1.6k
views
No gene can be mapped in Cluster profiler
clusterProfiler
updated 4.9 years ago by ★ 4.1k • written 4.9 years ago by • 0
2
votes
2
replies
2.6k
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 5.1 years ago by ▴ 50 • written 5.1 years ago by • 0
288 results • Page 3 of 6
Recent ...
Replies
Comment: PCA subset of genes vs DE by Ben • 0
PCA evaluates separation according to your input. The subset of genes you used may be entirely identical in terms of expression, indicatin…
Comment: Problem with MakeTxDbFromGFF by Ben • 0
Wow can't believe he can really answer this [speed stars][1] [1]: https://speed-stars.co
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Locations • All
United States, 1 hour ago
Poland, 3 hours ago
Denmark, 3 hours ago
WEHI, Melbourne, Australia, 3 hours ago
The city by the bay, 7 hours ago
Traffic: 1705 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6