Bioconductor Deseq2

52

votes

20

replies

53k

views

rnaseq batch effect deseq2 combat removebatcheffect()

updated 9.7 years ago by adam • 0 • written 10.2 years ago by AB ▴ 110

38

votes

23

replies

19k

views

deseq2

11.5 years ago • updated 11 months ago Michael Love 43k

34

votes

29

replies

17k

views

deseq2 timecourse

updated 17 months ago by Michael Love 43k • written 11.0 years ago by john ▴ 130

32

votes

16

replies

22k

views

tximport deseq2 TPM RPKM rnaseq

updated 7.8 years ago by luxeredias ▴ 20 • written 9.6 years ago by tangming2005 ▴ 200

31

votes

25

replies

65k

views

deseq2 lowcount

updated 3 months ago by Michael Love 43k • written 11.0 years ago by aristotele_m ▴ 40

28

votes

6

replies

49k

views

deseq2 r

updated 3.9 years ago by Hongwei ▴ 20 • written 9.1 years ago by tombernardryan ▴ 60

28

votes

7

replies

15k

views

deseq2 rnaseq statistics

updated 2.4 years ago by camillab. ▴ 10 • written 8.4 years ago by Russ Fraser ▴ 40

27

votes

7

replies

18k

views

RNAseq deseq2 ercc

updated 9.4 years ago by Simon Anders ★ 3.8k • written 9.4 years ago by mbeckste ▴ 30

27

votes

17

replies

10k

views

deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 4.8 years ago by Michael Love 43k • written 7.7 years ago by emi.sch ▴ 50

27

votes

22

replies

23k

views

deseq2 deseq chipseq

updated 8.7 years ago by k.vitting.seerup ▴ 120 • written 10.5 years ago by tangming2005 ▴ 200

26

votes

7

replies

14k

views

limma deseq2 edger rnaseq

updated 8.4 years ago by Gordon Smyth 53k • written 8.4 years ago by Jack ▴ 20

25

votes

11

replies

9.6k

views

deseq deseq2 edgeR normalization

updated 10.3 years ago by Simon Anders ★ 3.8k • written 10.3 years ago by Nik Tuzov ▴ 90

22

votes

12

replies

32k

views

deseq2

updated 6.5 years ago by Micheal Stark • 0 • written 8.8 years ago by Michael Love 43k

20

votes

15

replies

70k

views

deseq deseq2

updated 4.3 years ago by Michael Love 43k • written 11.3 years ago by francesca.defilippis ▴ 100

19

votes

7

replies

16k

views

deseq2 ensembl

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by casey.rimland ▴ 170

18

votes

12

replies

5.1k

views

edgeR deseq2 rna-seq independent filtering

updated 10.7 years ago by Michael Love 43k • written 10.7 years ago by Ryan C. Thompson ★ 7.9k

18

votes

4

replies

43k

views

deseq2 metagenomics

updated 5.5 years ago by Ram ▴ 220 • written 5.5 years ago by c.e.chong ▴ 10

18

votes

4

replies

40k

views

deseq2 edger

updated 10.3 years ago by Gordon Smyth 53k • written 10.3 years ago by tonja.r ▴ 80

17

votes

7

replies

16k

views

deseq2 lfc coef contrast

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by Anke Busch ▴ 10

17

votes

11

replies

44k

views

deseq2

updated 20 months ago by Michael Love 43k • written 10.1 years ago by ribioinfo ▴ 100

17

votes

13

replies

24k

views

deseq2

updated 4.7 years ago by Ian ▴ 10 • written 5.5 years ago by linouhao ▴ 20

17

votes

9

replies

8.6k

views

limma removebatcheffect deseq2

updated 17 months ago by James W. MacDonald 68k • written 9.7 years ago by ompandey ▴ 10

17

votes

45

replies

14k

views

NanoString Differential Expressed Genes Analysis DESeq2

updated 6 months ago by James W. MacDonald 68k • written 6.6 years ago by lim6432 ▴ 60

16

votes

12

replies

4.2k

views

vst Metabolomics DESeq2

3.9 years ago • updated 3.8 years ago Joan Miró ▴ 80

16

votes

19

replies

23k

views

deseq2 annotation granges

updated 4.1 years ago by Nadine ▴ 60 • written 11.3 years ago by Darya Vanichkina ▴ 130

16

votes

12

replies

9.8k

views

diffbind medip-seq edger deseq2

updated 18 months ago by khanwaled68 • 0 • written 10.0 years ago by florian.noack ▴ 60

15

votes

12

replies

3.5k

views

deseq2 ZINB-WaVE single cell RNA-seq differential expression

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by rory.kirchner ▴ 60

15

votes

12

replies

80k

views

deseq2

updated 10.9 years ago by Steve Lianoglou ★ 13k • written 10.9 years ago by john ▴ 130

15

votes

3

replies

2.6k

views

DESeq2 RNASeq

updated 4.0 years ago by molly_the_minotaur ▴ 30 • written 5.3 years ago by bi.mi ▴ 90

15

votes

18

replies

5.4k

views

DESeq2 edgeR goana GO

updated 3.9 years ago by Gordon Smyth 53k • written 3.9 years ago by Raito92 ▴ 60

15

votes

8

replies

12k

views

deseq2 deseq

11.3 years ago salahm ▴ 70

15

votes

4

replies

4.0k

views

edger limma deseq2 rnaseq

updated 9.7 years ago by Ryan C. Thompson ★ 7.9k • written 9.7 years ago by WouterDeCoster ▴ 130

14

votes

19

replies

10k

views

DESeq2 linear model model

updated 4.8 years ago by Michael Love 43k • written 11.3 years ago by andrew.j.skelton73 ▴ 370

14

votes

5

replies

26k

views

deseq2

updated 2.6 years ago by Juan Pablo • 0 • written 10.2 years ago by raya.fai ▴ 60

14

votes

16

replies

7.2k

views

edgeR deseq2 ase allele

10.4 years ago trianglescout ▴ 50

14

votes

5

replies

51k

views

plotPCA deseq2 labels

updated 9.2 years ago by Federico Marini ▴ 180 • written 9.2 years ago by al-ash ▴ 50

14

votes

9

replies

19k

views

deseq2 deseq rna-seq

11.1 years ago gavrielmatt ▴ 30

14

votes

22

replies

35k

views

deseq2 paired samples

updated 2.0 years ago by Michael Love 43k • written 9.7 years ago by adesrichard ▴ 30

13

votes

6

replies

8.1k

views

deseq2 deseq interactions multiple factor design

updated 10.1 years ago by Michael Love 43k • written 10.1 years ago by Stephen Turner ▴ 290

13

votes

10

replies

5.2k

views

edger deseq2

updated 10.2 years ago by Gordon Smyth 53k • written 10.2 years ago by Matarit • 0

13

votes

14

replies

43k

views

deseq2

updated 3.2 years ago by Jiahua • 0 • written 6.5 years ago by Jonas B. ▴ 40

12

votes

9

replies

12k

views

deseq2

11.2 years ago aburkha69 ▴ 30

12

votes

4

replies

5.5k

views

deseq2 wgcna salmon

updated 7.3 years ago by Peter Langfelder ★ 3.0k • written 7.3 years ago by maya.kappil ▴ 30

12

votes

6

replies

4.3k

views

rnaseq deseq2 edger

10.3 years ago martiningi ▴ 40

12

votes

7

replies

23k

views

deseq2 multiple factor design

updated 9 months ago by boczniak767 ▴ 740 • written 10.8 years ago by kmu004 ▴ 50

12

votes

1

reply

8.6k

views

deseq2 plotpca PCa

updated 8.4 years ago by Michael Love 43k • written 8.4 years ago by lirongrossmann ▴ 80

12

votes

11

replies

5.7k

views

bplapply biocparallel deseq2

updated 10.6 years ago by Valerie Obenchain ★ 6.8k • written 10.6 years ago by Lauren ▴ 40

12

votes

8

replies

2.8k

views

deseq2

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by Matthew McCall ▴ 830

12

votes

18

replies

7.9k

views

deseq2 limma

updated 4.9 years ago by Gordon Smyth 53k • written 5.5 years ago by Sam ▴ 10

11

votes

8

replies

12k

views

WGCNA RNA-Seq DESeq2 voom removebatcheffect()

updated 9.4 years ago by Peter Langfelder ★ 3.0k • written 9.4 years ago by gokce.ouz ▴ 70