Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
biocparallel
•
reset
1
vote
2
replies
148
views
Reproducibility issue with scran together with lapply and BiocParallel
scran
BiocParallel
bluster
10 days ago • updated 9 days ago
ATpoint
★ 4.1k
3
votes
3
replies
197
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
21 days ago • updated 16 days ago
jacques.imbert
• 0
0
votes
3
replies
437
views
scran package: quickCluster and calculateSumFactors parallelization
BiocParallel
scran
updated 3 months ago by
ATpoint
★ 4.1k • written 3 months ago by
qwang178
• 0
1
vote
4
replies
600
views
BiocParallel serialization errors on Windows
variancePartition
BiocParallel
4 months ago
hayleyw
• 0
0
votes
2
replies
1.2k
views
Error: BiocParallel errors
xcms
msdata
BiocParallel
8 months ago
mavamay
• 0
1
vote
11
replies
1.5k
views
BiocParallel 1.33.12 binary has incorrect library linkage on macOS x86
BiocParallel
updated 12 months ago by
Martin Morgan
25k • written 12 months ago by
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.2k
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 16 months ago by
Christian Mertes
• 0 • written 18 months ago by
me.achleitner
• 0
0
votes
1
reply
762
views
Biocparallel Error "Error: BiocParallel errors element index: 1, 2, 3 first error: unable to find an inherited method for function ‘bpbackend’ fo…
R
OUTRIDER
BiocParallel
updated 16 months ago by
Christian Mertes
• 0 • written 18 months ago by
me.achleitner
• 0
1
vote
1
reply
671
views
Limit the number of nodes in DESeq2
DESeq2
BiocParallel
updated 18 months ago by
ATpoint
★ 4.1k • written 18 months ago by
Sebastian
▴ 10
0
votes
0
replies
1.0k
views
gseDo function issue
Biocpa
BiocParallel
18 months ago
meetdpanjwani1990
• 0
4
votes
13
replies
3.7k
views
BiocParallel error with ChIPQC
BiocManager
ChIPQC
RSamtools
BiocParallel
updated 15 months ago by
Rory Stark
★ 5.2k • written 22 months ago by
etiennedanis
• 0
2
votes
4
replies
1.1k
views
Load packages when using BatchtoolsParam
BatchtoolsParam
BiocParallel
2.1 years ago • updated 23 months ago
jianhai.zhang
• 0
3
votes
2
replies
1.2k
views
BiocParallel errors from muscat
BiocParallel
muscat
single-cell
2.1 years ago
tangming2005
▴ 190
1
vote
1
reply
768
views
Use MulticoreParam under BatchtoolsParam
BatchtoolsParam
MulticoreParam
BiocParallel
updated 2.1 years ago by
Martin Morgan
25k • written 2.1 years ago by
jianhai.zhang
• 0
1
vote
2
replies
2.7k
views
BiocParallel error when running DiffBind
BiocParallel
BiocPa
DiffBind
updated 2.1 years ago by
Martin Morgan
25k • written 2.2 years ago by
r.finn
▴ 10
0
votes
3
replies
721
views
How to get DESeq2 results in large count matix files?
DESeq2
BiocParallel
MulticoreParam
updated 2.3 years ago by
Michael Love
41k • written 2.3 years ago by
mathavanbioinfo
▴ 20
0
votes
0
replies
643
views
BiocParallel errors in XCMS peak-picking
BiocParallel
xcms
biocparallel
2.5 years ago
noerman
• 0
1
vote
5
replies
1.4k
views
slow bplapply?
BiocParallel
2.5 years ago • updated 16 months ago
Wu, Hao
▴ 20
3
votes
3
replies
1.7k
views
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater
SingleCellExperiment
BiocParallel
scuttle
scran
2.5 years ago
enricoferrero
▴ 660
0
votes
4
replies
1.8k
views
DESeq2::DESeq(..., parallel = TRUE) fails if a partition has only genes with 0 counts across all samples
DESeq2
BiocParallel
2.7 years ago
Steffi Grote
▴ 10
2
votes
2
replies
1.3k
views
scater::calculatePCA error when using BPPARAM = MulticoreParam
calculatePCA
BPPARAM
scater
BiocParallel
runPCA
2.9 years ago
doliv071
• 0
0
votes
1
reply
1.1k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel
limma
variancePartition
3.0 years ago • updated 2.9 years ago
Junghoon
▴ 10
0
votes
1
reply
1.1k
views
Error while running variancePartition::dream()
variancePartition
limma
BiocParallel
3.0 years ago
Junghoon
▴ 10
0
votes
4
replies
1.1k
views
BiocParallel: bplapply invents data
BiocParallel
ShortRead
3.1 years ago
robmaz77
▴ 20
0
votes
0
replies
1.4k
views
BiocParallel errors with xcms
BiocParallel
xcms
3.1 years ago
Yuki
▴ 10
2
votes
2
replies
913
views
how to use biocParallel for large local variables?
BiocParallel
3.3 years ago
oyoung122
▴ 20
3
votes
3
replies
1.4k
views
first error: could not find function "readGAlignments" in BiocParallel
BiocParallel
3.3 years ago
Guandong Shang
▴ 40
1
vote
1
reply
1.4k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 3.3 years ago by
Rory Stark
★ 5.2k • written 3.3 years ago by
Victor
• 0
0
votes
1
reply
854
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 3.3 years ago by
Matthias Lienhard
▴ 240 • written 3.3 years ago by
mbk0asis
• 0
3
votes
7
replies
2.2k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.2 years ago by
koushik
• 0 • written 3.5 years ago by
Tay
▴ 10
0
votes
0
replies
688
views
Job:
Two Fellowship Positions in Bioinformatics and Toxicology are avaiable immediately at US EPA
job
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
whduke
• 0
7
votes
4
replies
1.7k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
gabriel.hoffman
▴ 110
0
votes
6
replies
1.1k
views
BiocParallel with drake hangs
BiocParallel
4.2 years ago
biomiha
▴ 20
2
votes
2
replies
734
views
Number of MPI slaves in BiocParallel
BiocParallel
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
Homer
• 0
0
votes
2
replies
826
views
Run jobs asynchronously with BiocParellel
BiocParallel
future
batchtools
updated 4.5 years ago by
Martin Morgan
25k • written 4.5 years ago by
Qiang
▴ 80
0
votes
2
replies
1.0k
views
Issue/Error with DEXSeq design formulae in testForDEU function
deseq2
DEXSeq
BioCParallel
updated 4.7 years ago by
Alejandro Reyes
★ 1.9k • written 4.7 years ago by
acciardo
• 0
1
vote
4
replies
2.0k
views
BiocParallel: What its the best way to pass large a dataset for parallel processing?
bioconductor
bplapply
bpiterate
iterator
BiocParallel
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
gabriel.hoffman
▴ 110
0
votes
1
reply
1.4k
views
ChIPQC BiocParallel errors
ChIPQC
ChIPQC error
BiocParallel
4.8 years ago
minervajunjun
• 0
2
votes
1
reply
1.9k
views
Rsubread installation problem
Rsubread
BiocParallel
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
agustin.gonvi
▴ 20
2
votes
3
replies
1.4k
views
bplapply - only SerialParam or single worker Multicore working on R/macos 10.14
BiocParallel
mac
R
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
geo.vogler
▴ 10
0
votes
6
replies
1.6k
views
how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)
BiocParallel
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
luluchen
• 0
3
votes
6
replies
1.3k
views
nbinomLRT function all cores usage
deseq2
nbinomLRT
sample size
biocparallel
updated 5.5 years ago by
davide risso
▴ 950 • written 5.5 years ago by
mcalgaro93
• 0
2
votes
5
replies
2.5k
views
Issue with BiocParallel
purecn
biocparallel
5.5 years ago
milos-91
• 0
6
votes
8
replies
2.0k
views
BioParallel::BatchtoolsParam() - how to pass customized resource variables to batchtool's "slurm-simple" template using BatchtoolsParam()?
biocparallel
BatchtoolsParam
updated 5.5 years ago by
Mike Smith
★ 6.5k • written 5.5 years ago by
Chao-Jen Wong
▴ 40
4
votes
2
replies
923
views
bpaggregate with formula returns strange error message
biocparallel
bpaggregate
aggregate
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
maltethodberg
▴ 180
5
votes
6
replies
2.9k
views
BiocParallel: database disk image is malformed
biocparallel
databases
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
Paul Shannon
▴ 470
1
vote
1
reply
1.6k
views
Installing package BiocParallel failed
biocparallel
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Jiang, Mike
★ 1.3k
1
vote
5
replies
1.3k
views
Help using 'handler' function with bptry()
biocparallel
error handling
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Peter Hickey
▴ 740
12
votes
15
replies
3.4k
views
error with HDF5Array
hdf5array
biocparallel
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
cath
▴ 30
0
votes
1
reply
1.3k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 6.0 years ago by
zhengx
▴ 30 • written 6.0 years ago by
Vinicius Henrique da Silva
▴ 40
50 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
France,
11 minutes ago
WEHI, Melbourne, Australia,
27 minutes ago
Miami, FL,
57 minutes ago
Sweden,
1 hour ago
Japan,
1 hour ago
Traffic: 496 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6