Showing : ggbio • reset
18
votes
4
replies
1.7k
views
`ggbio` package can't be loaded
ggbio
3.4 years ago Batool ▴ 370
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 4.8 years ago by ★ 1.5k • written 8.9 years ago by ▴ 370
7
votes
9
replies
3.0k
views
Install ggbio development version
ggbio development package installation
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
4
votes
3
replies
2.5k
views
ggbio error: Objects of type OrganismDb not supported by autoplot
GO OrganismDb ggbio GO OrganismDb ggbio
updated 9.4 years ago by ▴ 50 • written 9.7 years ago by ▴ 120
3
votes
2
replies
1.7k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
8.2 years ago Mario Saare ▴ 20
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
8.4 years ago areyoujokingme • 0
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 8.3 years ago by ▴ 10 • written 8.3 years ago by • 0
2
votes
1
reply
2.1k
views
ggbio: examples of overlaying multiple assay datasets
ggbio visualization ggbio
updated 9.7 years ago by ▴ 30 • written 9.7 years ago by ▴ 190
2
votes
2
replies
982
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
5.7 years ago Lescai, Francesco ▴ 380
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio SNP granges
updated 8.4 years ago by ★ 11k • written 8.4 years ago by • 0
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ▴ 10
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.7 years ago oswaldo.lorenzo ▴ 10
2
votes
5
replies
3.3k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
6.9 years ago Bogdan ▴ 670
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.7 years ago oswaldo.lorenzo ▴ 10
1
vote
5
replies
961
views
how can I add a label for granges using the geom_rect ?
ggbio
18 months ago • updated 17 months ago 潘晓光 • 0
1
vote
1
reply
1.0k
views
Bug in ggbio's geom_alignment when using facet
ggbio facet
updated 9.1 years ago by ★ 11k • written 9.3 years ago by ▴ 20
1
vote
2
replies
1.6k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
5.5 years ago t.fadason ▴ 10
1
vote
3
replies
2.9k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
1
vote
1
reply
1.2k
views
Problems with parsing of geom_alignment()'s type column (from ggbio)
ggbio geom_alignment
updated 9.1 years ago by ★ 11k • written 9.3 years ago by ▴ 20
1
vote
3
replies
1.6k
views
ggbio - change transcript label sizes
ggbio annotation
updated 2.1 years ago by ▴ 50 • written 4.7 years ago by ★ 3.9k
1
vote
1
reply
1.2k
views
Add main title to ggbio's karyogram
ggbio karyogram granges
updated 7.6 years ago by ★ 11k • written 7.6 years ago by ▴ 80
1
vote
3
replies
1.4k
views
circular display in ggbio
ggbio
8.8 years ago Bogdan ▴ 670
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ucsctrack ggbio Gviz hg19
updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 10
1
vote
4
replies
2.4k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 8.3 years ago by ▴ 10 • written 8.4 years ago by ▴ 10
1
vote
11
replies
4.7k
views
Error when install ggbio
ggbio biocinstaller
updated 8.3 years ago by • 0 • written 8.4 years ago by ▴ 20
1
vote
3
replies
2.0k
views
Loading alternative genomes into ggbio
ggbio
8.7 years ago daniel.antony.pass • 0
1
vote
1
reply
1.0k
views
ggbio labels with ggrepeal on circos plot
ggbio r graphics
5.6 years ago franceschini.gianmarco • 0
0
votes
1
reply
1.1k
views
Changing the x axis size using tracks (ggbio)
ggbio
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 40
0
votes
3
replies
2.0k
views
trouble installing affycoretools for R 3.0
VariantAnnotation GO BSgenome affycoretools BSgenome VariantAnnotation ggbio GO BSgenome
updated 11.1 years ago by 65k • written 11.1 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
Error with autoplot of transcriptDB object
ggbio
9.7 years ago Mark Dunning ★ 1.1k
0
votes
0
replies
1.3k
views
autoplot() in ggbio package for txdb object
ggbio ggbio
9.7 years ago Tengfei Yin ▴ 490
0
votes
3
replies
1.5k
views
help with visualizing structural variation data
ggbio ggbio
11.4 years ago Abhishek Pratap ▴ 410
0
votes
1
reply
1.0k
views
status of visnab
Visualization ggbio Gviz Visualization ggbio Gviz
updated 11.0 years ago by ▴ 420 • written 11.0 years ago by ▴ 410
0
votes
1
reply
1.5k
views
Positional Details with Features through UniProt.ws Ultimately to display as tracks in ggbio
annotate ggbio annotate ggbio
updated 9.7 years ago by ▴ 490 • written 9.8 years ago by ▴ 30
0
votes
6
replies
1.4k
views
pileupAsGRanges depth limit
Sequencing ggbio Sequencing ggbio
updated 11.4 years ago by 25k • written 11.4 years ago by ★ 1.1k
0
votes
1
reply
1.9k
views
plotIdeogram for non-human or mouse genome
ideogram ggbio ideogram ggbio
updated 9.7 years ago by ▴ 490 • written 9.8 years ago by ★ 1.1k
0
votes
0
replies
1.2k
views
autoplot() in ggbio package for txdb object
ggbio ggbio
9.9 years ago sun ▴ 100
0
votes
4
replies
3.4k
views
How to combine VCF-class and data.frame with annotations
GO annotate convert ggbio GO annotate convert ggbio
written 11.7 years ago by ▴ 70
0
votes
1
reply
1.4k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 370
0
votes
4
replies
1.9k
views
GGally ggbio conflict/bug
ggbio ggbio
updated 10.5 years ago by ★ 11k • written 10.5 years ago by ▴ 10
0
votes
2
replies
1.1k
views
color-coded arch intensity in ggbio
ggbio ggbio
updated 10.0 years ago by ▴ 420 • written 10.0 years ago by ▴ 670
0
votes
0
replies
984
views
ggbio circular plot rectangle colours - possible bug
ggbio
9.2 years ago • updated 9.1 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
0
votes
5
replies
1.4k
views
Graphing coverage() results
ggbio genomicalignments bam
9.2 years ago gen ▴ 30
0
votes
1
reply
1.2k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb ideogram ggbio TranscriptDb ideogram ggbio
updated 10.4 years ago by ★ 1.0k • written 10.5 years ago by ▴ 490
0
votes
2
replies
1.0k
views
about tracks() in ggbio
ggbio
9.1 years ago • updated 9.0 years ago Bogdan ▴ 670
0
votes
1
reply
1.0k
views
visualization of interactions
ggbio ggbio
updated 11.8 years ago by ▴ 420 • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.5k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r ggbio ggplot2 dnaseq genomicranges
updated 8.9 years ago by ▴ 130 • written 8.9 years ago by • 0
0
votes
0
replies
1.8k
views
ggbio circular plot y axis scale
ggbio
9.2 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
0
votes
5
replies
1.8k
views
circular display in ggbio for gene tracks
ggbio
8.8 years ago Bogdan ▴ 670
0
votes
0
replies
910
views
ggbio circle "scale.unit"
ggbio
9.3 years ago rwness • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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