Showing : hgu133plus2 • reset
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Fail to install hgu133plus2.db
org.Hs.eg.db hgu133plus2
updated 9 months ago by 68k • written 9 months ago by • 0
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588
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Error: package ‘hgu133plus2’
hgu133plus2
updated 2.0 years ago by 4.1k • written 2.0 years ago by • 0
2
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1
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2.3k
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 4.3 years ago by ▴ 20 • written 12.1 years ago by ▴ 340
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4
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
7.3 years ago rahil ▴ 30
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hgu133plus2cdf cant download
normalization hgu133plus2
7.6 years ago marion.ryan • 0
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4
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error in sort.int , 'x' must be atomic in affy::boxplot
affy package boxplot hgu133plus2 oligo package
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 840
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4
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1.7k
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about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 8.2 years ago by ▴ 10 • written 15.9 years ago by ▴ 430
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HGU133PLUS.db : NA's when using getSYMBOL while uptodate NetAffx database gives gene names
Annotation hgu133plus2
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
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2
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Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
10.1 years ago • updated 8.5 years ago IOM ▴ 20
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5
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2.6k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 9.1 years ago by ▴ 110 • written 13.0 years ago by ▴ 760
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2.7k
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How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 9.4 years ago by ▴ 370 • written 9.4 years ago by • 0
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3
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HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
10.1 years ago kanacska ▴ 10
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3
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Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 10
2
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2
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1.6k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
0
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2
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2.3k
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HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ★ 13k
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1.3k
views
virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
10.6 years ago Guest User ★ 13k
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1
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1.8k
views
Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
updated 10.7 years ago by ▴ 390 • written 10.7 years ago by ▴ 10
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0
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9.6k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
10.9 years ago Guest User ★ 13k
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5
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2.5k
views
genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 10.9 years ago by 52k • written 10.9 years ago by ★ 13k
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3
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2.4k
views
BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ▴ 10
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0
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953
views
Problem with geneAnswers, Reactome and some converted affy IDs
hgu133plus2 probe hgu133plus2 probe
11.1 years ago Ulrik Stervbo ▴ 30
0
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1
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15k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 11.4 years ago by ★ 1.6k • written 11.4 years ago by ★ 13k
0
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1
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3.0k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by ▴ 10
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1
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2.2k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 11.4 years ago by ▴ 80 • written 11.4 years ago by ▴ 20
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4
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4.2k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 11.4 years ago by 68k • written 11.4 years ago by ★ 13k
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0
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1.4k
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virtualArray: Error at second execution of virtualArrayExpressionSets
hgu133plus2 virtualArray hgu133plus2 virtualArray
11.4 years ago Guest User ★ 13k
0
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0
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2.0k
views
Unable to install hgu133plus2.db
hgu133plus2 hgu133plus2
11.5 years ago Guest User ★ 13k
0
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2
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1.5k
views
segfault ReadAffy cause 'memory not mapped'
Cancer hgu133plus2 affy PROcess Cancer hgu133plus2 affy PROcess
updated 11.5 years ago by ★ 1.2k • written 11.5 years ago by ▴ 70
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0
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1.8k
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.6 years ago b a ▴ 40
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1.2k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.6 years ago b a ▴ 40
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2
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1.9k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 11.7 years ago by ▴ 240 • written 11.7 years ago by ★ 1.1k
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1
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2.0k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 90
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2
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2.2k
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Question about mget vs. select for annotation package
hgu133plus2 probe hgu133plus2 probe
updated 11.8 years ago by 16k • written 11.8 years ago by ▴ 40
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2.1k
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inSilicoMerging and Limma
Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma
11.9 years ago Ed Siefker ▴ 230
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0
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1.4k
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
12.0 years ago Daniel Emden ▴ 10
0
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1.4k
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topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
12.1 years ago Kishor Tappita ▴ 340
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2
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1.4k
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Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2 hgu133plus2
updated 12.4 years ago by ★ 2.0k • written 12.4 years ago by 52k
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4
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3.1k
views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ★ 13k
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6
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2.0k
views
outlier probes detection
hgu133plus2 hgu133plus2
updated 13.0 years ago by ▴ 210 • written 13.0 years ago by ▴ 240
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3
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1.7k
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
13.0 years ago Mayte Suarez-Farinas ▴ 510
0
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1
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1.4k
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 240
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3
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1.6k
views
GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 120
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2
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2.7k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 13.1 years ago by ★ 1.9k • written 13.1 years ago by ▴ 230
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4
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1.6k
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Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
13.1 years ago Fabrice Tourre ▴ 970
0
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1
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1.5k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 13.2 years ago by ▴ 830 • written 13.2 years ago by ▴ 20
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1
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1.2k
views
Creating a customized cut flow with the affy/limma packages
GO hgu133plus2 limma ASSIGN GO hgu133plus2 limma ASSIGN
updated 13.2 years ago by 68k • written 13.2 years ago by ★ 13k
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1
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1.6k
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refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 240
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984
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Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
hgu133plus2 hgu133plus2
13.4 years ago Guest User ★ 13k
0
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4
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1.9k
views
annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ▴ 380
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1
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1.1k
views
a question for SPIA package
Annotation hgu133plus2 Annotation hgu133plus2
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 380
50 results • Page 1 of 1
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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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