Showing : iranges • reset
2
votes
5
replies
2.1k
views
making a RleViewsList object gets slow with many chromosomes
views iranges rle
11.1 years ago Janet Young ▴ 740
0
votes
5
replies
1.7k
views
Subscripting GenomicRanges objects with [[ or $
IRanges IRanges
updated 15.5 years ago by ★ 11k • written 15.5 years ago by ▴ 250
3
votes
5
replies
1.6k
views
IRanges start bigger than end
iranges
10.0 years ago vedran.franke • 0
0
votes
4
replies
1.3k
views
findOveraps suggestions
Cancer IRanges Cancer IRanges
updated 16.1 years ago by ★ 11k • written 16.1 years ago by ▴ 740
1
vote
4
replies
2.3k
views
chimera error after update to R 3.2
chimera IRanges
updated 10.3 years ago by ▴ 500 • written 10.7 years ago by ▴ 10
1
vote
4
replies
2.2k
views
IRanges missing S4Vectors_defines.h
iranges s4vectors
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 20
0
votes
4
replies
2.2k
views
help with flank()
IRanges IRanges
updated 15.4 years ago by 6.7k • written 15.4 years ago by ▴ 330
0
votes
4
replies
1.8k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 15.7 years ago by ▴ 450 • written 15.7 years ago by ▴ 810
0
votes
4
replies
1.5k
views
Performing set ops with an IRanges object loaded with elementMetadata is like a shotgun, pointing at my foot.
Cancer IRanges Cancer IRanges
updated 15.6 years ago by ★ 11k • written 15.6 years ago by ★ 13k
7
votes
4
replies
2.8k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 8.4 years ago by 16k • written 8.4 years ago by ▴ 40
0
votes
4
replies
2.6k
views
Getting first or last hit from a Hits object
IRanges GenomicRanges IRanges GenomicRanges
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ▴ 760
1
vote
4
replies
2.2k
views
IRanges (GRanges): Inconsistent behaviour when overlapping ranges of width 0
Iranges granges
updated 8.5 years ago by 16k • written 8.5 years ago by ▴ 40
0
votes
4
replies
1.6k
views
Problem with IRanges and GenomicRanges
iranges genomicranges
updated 8.5 years ago by 16k • written 8.5 years ago by • 0
0
votes
4
replies
3.1k
views
error in exomeCopy - IRanges?
IRanges exomeCopy IRanges exomeCopy
updated 13.6 years ago by ▴ 150 • written 13.6 years ago by ▴ 380
1
vote
4
replies
3.2k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 8.2 years ago by 25k • written 8.2 years ago by • 0
3
votes
4
replies
2.5k
views
Introns at transcript expression level
genomicfeatures iranges
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 20
0
votes
4
replies
1.1k
views
Getting the length of every element from a large CompressedIRangesList is slow
IRanges IRanges
13.7 years ago delhomme@embl.de ★ 1.2k
1
vote
4
replies
1.6k
views
pROBLEMS WITH findOverlapPairs
gRANGES iranges findoverlaps
updated 9.1 years ago by 68k • written 9.1 years ago by ▴ 30
0
votes
4
replies
1.8k
views
IRanges::unlist in package
rtracklayer IRanges GenomicFeatures Rsamtools rtracklayer IRanges GenomicFeatures Rsamtools
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 220
2
votes
4
replies
1.7k
views
How to remove duplicated overlap hit index in IntegerList efficiently [solved] ?
r iranges integerlist
9.4 years ago Jurat Shahidin ▴ 80
2
votes
4
replies
2.1k
views
plotting proteases digestion points in a protein
biostrings iranges sequence alignment protein
updated 9.1 years ago by ★ 11k • written 9.1 years ago by ★ 1.5k
0
votes
4
replies
2.2k
views
Using GenomicRanges with table data
IRanges GenomicRanges IRanges GenomicRanges
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 60
0
votes
4
replies
6.1k
views
GRanges - coercion from dataframe
convert IRanges convert IRanges
14.3 years ago Fahim Md ▴ 250
2
votes
4
replies
2.0k
views
convert a sequence to Ranges object
iranges fasta split
updated 9.1 years ago by ★ 11k • written 9.1 years ago by ★ 1.5k
0
votes
4
replies
1.7k
views
IRanges: Request for a "step" argument in runsum
Coverage Annotation Cancer PROcess IRanges genomes Coverage Annotation Cancer PROcess
updated 14.7 years ago by 16k • written 14.7 years ago by ▴ 100
1
vote
4
replies
2.4k
views
IRanges::findOverlapPairs cannot take inputs if they are too large
IRanges GenomicRanges
4.8 years ago Yixin • 0
1
vote
4
replies
1.1k
views
Is there a way to allow elements with no IRanges when subsetting an IRangesList
IRanges Biostrings S4Vectors
written 16 months ago by • 0
0
votes
4
replies
1.5k
views
IRanges: Request for a "step" argument in runsum
Cancer IRanges genomes Cancer IRanges genomes
updated 14.8 years ago by ★ 11k • written 14.8 years ago by ▴ 100
3
votes
4
replies
2.1k
views
Error with importFrom and GenomicRanges in NAMESPACE
GenomicRanges IRanges
updated 3.0 years ago by 16k • written 3.0 years ago by • 0
2
votes
4
replies
5.1k
views
Help with sliding window analysis on GRanges object
IRanges IRanges
12.0 years ago Stefano Iantorno ▴ 30
0
votes
4
replies
2.3k
views
IRanges: solving row 5: range cannot be determined from the supplied arguments (too many NAs)
IRanges rtracklayer
updated 6.3 years ago by 68k • written 6.3 years ago by ▴ 30
0
votes
4
replies
1.2k
views
knowing what is changed/new in release patches
IRanges IRanges
updated 13.3 years ago by ★ 6.5k • written 13.3 years ago by ★ 1.6k
0
votes
4
replies
2.6k
views
Help with sliding window analysis on GRanges object
SNP IRanges SNP IRanges
updated 11.9 years ago by ★ 11k • written 11.9 years ago by ▴ 140
0
votes
3
replies
958
views
A story about IRanges::GappedRanges ... how does it end?
Cancer IRanges Cancer IRanges
updated 15.4 years ago by ★ 11k • written 15.4 years ago by ★ 13k
0
votes
3
replies
1.7k
views
View of subsequences corresponding granges on +ve strand and rev. complementary of seq on -ve strand.
Views granges grangeslist iranges
updated 10.4 years ago by 16k • written 10.4 years ago by ▴ 50
0
votes
3
replies
1.5k
views
IRanges: find containment and not just overlap
IRanges IRanges
updated 17.0 years ago by ▴ 620 • written 17.0 years ago by ▴ 210
0
votes
3
replies
2.2k
views
Using IRanges to find gene TSS that overlap a window
iranges R granges
updated 8.5 years ago by • 0 • written 8.6 years ago by ▴ 20
0
votes
3
replies
1.8k
views
GenomicRanges based on indices or more conditions, and add column from match
genomicranges iranges findoverlaps
7.4 years ago francesca casalino ▴ 50
0
votes
3
replies
1.5k
views
seqselect function in IRanges not working
IRanges IRanges
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 250
0
votes
3
replies
1.3k
views
startup options
IRanges IRanges
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ★ 6.5k
4
votes
3
replies
1.4k
views
stacking (partially or completely overlapping) GRanges/IRanges
granges iranges rnaseq
updated 11.1 years ago by 25k • written 11.1 years ago by ★ 2.1k
0
votes
3
replies
2.3k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle granges iranges
9.4 years ago my4 ▴ 10
3
votes
3
replies
1.9k
views
Gaia results including negative widths
gaia genomicranges iranges
updated 7.6 years ago by ▴ 40 • written 7.6 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Irange _ Start and End
iranges
updated 8.6 years ago by ★ 11k • written 8.6 years ago by • 0
0
votes
3
replies
3.1k
views
trouble using help() after loading IRanges and [tcl] grab failed and possible tcltk problem
GO IRanges GO IRanges
updated 16.0 years ago by 16k • written 16.0 years ago by ▴ 350
4
votes
3
replies
2.8k
views
Overlap the snps
overlap snps granges iranges
updated 11.4 years ago by ★ 11k • written 11.4 years ago by ▴ 10
0
votes
3
replies
1.4k
views
segfault for countOverlaps
genomicranges IRanges
9.7 years ago Stephen Cristiano • 0
1
vote
3
replies
1.5k
views
Error trying to run "seqlm" example
seqlm IRanges R namespace dmr analysis
9.6 years ago calen.p.ryan • 0
10
votes
3
replies
11k
views
resize (shrink/expand) GenomicRanges
GenomicRanges IRanges
updated 10.0 years ago by 16k • written 10.0 years ago by ▴ 40
0
votes
3
replies
1.5k
views
IRanges::rbind with names stopped working
IRanges IRanges
updated 16.1 years ago by ★ 11k • written 16.1 years ago by ★ 3.4k
275 results • Page 2 of 6
Recent ...
Replies
Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Matan G. ▴ 60
Popular Question to Jaqueline • 0
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Locations • All
Germany, 36 minutes ago
USA, 46 minutes ago
United States, 2 hours ago
Barcelona, Spain, 2 hours ago
United States, 3 hours ago
Traffic: 1240 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6