Showing : methylationarrayanalysis • reset
0
votes
7
replies
377
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
5 weeks ago • updated 29 days ago hortense96 • 0
1
vote
1
reply
353
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 3 months ago by 66k • written 3 months ago by • 0
1
vote
4
replies
529
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
3 months ago mikat • 0
5
votes
1
reply
1.5k
views
Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 4 months ago by • 0 • written 14 months ago by ▴ 70
2
votes
4
replies
695
views
Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 5 months ago by 50k • written 5 months ago by • 0
3
votes
6
replies
734
views
Methylation data analysis
MethylationArrayData methylationArrayAnalysis
6 months ago aldea85 • 0
2
votes
7
replies
2.5k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 7 months ago by • 0 • written 3.4 years ago by ▴ 20
0
votes
1
reply
768
views
EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 7 months ago by 66k • written 7 months ago by • 0
1
vote
3
replies
552
views
Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 9 months ago by 66k • written 9 months ago by • 0
0
votes
1
reply
2.6k
views
Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 10 months ago by ★ 4.1k • written 10 months ago by ▴ 10
0
votes
3
replies
2.8k
views
Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 10 months ago by • 0 • written 19 months ago by • 0
1
vote
2
replies
614
views
edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
10 months ago Krzysztof • 0
1
vote
2
replies
675
views
How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
11 months ago Irene • 0
0
votes
2
replies
1.0k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
13 months ago • updated 12 months ago arisarkar88 ▴ 40
1
vote
1
reply
579
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
2
votes
6
replies
1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 13 months ago by ▴ 180 • written 13 months ago by • 0
0
votes
1
reply
561
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 13 months ago by 50k • written 13 months ago by • 0
0
votes
1
reply
633
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
5
replies
1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 14 months ago by • 0
0
votes
4
replies
1.0k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
1
reply
685
views
Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 17 months ago by ★ 2.0k
0
votes
7
replies
2.7k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 19 months ago by 66k • written 2.0 years ago by • 0
0
votes
0
replies
746
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.2 years ago Jitendra ▴ 10
0
votes
0
replies
958
views
getsex function error.
QualityControl methylationArrayAnalysis
2.3 years ago zusman • 0
2
votes
4
replies
1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
2.3 years ago Jojo • 0
0
votes
6
replies
3.4k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.9 years ago FWNL15 • 0
0
votes
2
replies
973
views
Limma experiment design and making contrasts
limma methylationArrayAnalysis
3.1 years ago Kesava • 0
0
votes
2
replies
1.4k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
3.1 years ago arisarkar88 ▴ 40
1
vote
8
replies
1.4k
views
EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
3.1 years ago chay • 0
0
votes
2
replies
887
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.3 years ago sissialva21 • 0
1
vote
1
reply
1.2k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 3.6 years ago by 66k • written 3.6 years ago by • 0
31 results • Page 1 of 1
Recent ...
Replies
Comment: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.1k
Hi, What do you get if you run the following `httr::HEAD()` command? I noticed that you have `libcurl` version 8.3.0 from `curl::curl_vers…
Comment: Slightly different count plots from R and spreadsheet by boczniak767 ▴ 720
Thank you @mikelove for your patience and kind advice. So I assume the plots from R are valid. Best wishes.
Answer: Help with infinite recursion - non-zero exit status in installation of GenomeInf by James W. MacDonald 66k
Maybe just try again? ``` > install("GenomeInfoDbData", force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositorie…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf by Brandon • 0
Hello, As an update, I am able to install and load GenomeInfoDb successfully in a fresh renv in my WSL distro. However, I'm not sure what …
Comment: slingshot: error with plot3d.SlingshotDataSet by Kelly Street • 0
This issue has been addressed [on GitHub][1]. [1]: https://github.com/kstreet13/slingshot/issues/249
Votes
Comment: recount3 problem downloading data from source sra
Answer: Slightly different count plots from R and spreadsheet
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
Awards • All
Popular Question to Andrew Pattison • 0
Popular Question to pcantalupo ▴ 10
Scholar to Michael Love 42k
Popular Question to Jenny Drnevich ★ 2.0k
Centurion to boczniak767 ▴ 720
Locations • All
United States, 1 minute ago
Australia, 19 minutes ago
United States, 24 minutes ago
Seattle, WA, United States, 24 minutes ago
Australia, 47 minutes ago
Traffic: 564 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6