Showing : microarray • reset
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.3 years ago by ▴ 10
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4
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2.7k
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How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 18 months ago by • 0
2
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2
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2.5k
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Biostatistician Position: UMass Medical School
Microarray Microarray
written 16.9 years ago by ▴ 190
0
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2
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726
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Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray Alignment Biostrings
written 13 months ago by ▴ 70
1
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2
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919
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Filter by expression and keep probes in limma
R filter limma Normalization Microarray
13 months ago Abdul ▴ 20
2
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2
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686
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Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
13 months ago Abdul ▴ 20
0
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2
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715
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Full list of differential genes not obtained in topTable
Microarray GEOquery topTable limma
updated 14 months ago by 50k • written 14 months ago by • 0
1
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6
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1.8k
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can negative value microarray matrix data analysed by limma directly
limma microarray normalization
updated 9 months ago by 50k • written 3.7 years ago by ▴ 20
2
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2
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676
views
Question about avereps function of limma
avereps probes average limma Microarray
updated 14 months ago by 50k • written 14 months ago by ▴ 10
0
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0
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651
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
15 months ago jsharif • 0
0
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1
reply
653
views
Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 16 months ago by 66k • written 16 months ago by • 0
0
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2
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959
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
16 months ago dqt • 0
0
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2
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735
views
Celfiles not reading in
Microarray
written 17 months ago by • 0
1
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2
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6.3k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 17 months ago by ▴ 20 • written 6.5 years ago by • 0
6
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6
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1.5k
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Too many differentially expressed miRNA with limma
limma miRNA Microarray
18 months ago Sara ▴ 10
0
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17
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2.3k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 15 months ago by 50k • written 19 months ago by • 0
0
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1
reply
698
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 23 months ago by 50k • written 23 months ago by • 0
0
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8
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1.5k
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Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
23 months ago YC • 0
2
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13
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4.6k
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Error in using r
microarray
updated 23 months ago by • 0 • written 7.6 years ago by • 0
0
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4
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1.1k
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Thoughts on how to model gene expression data from two groups in a clinical trial
Microarray DifferentialExpression
23 months ago S • 0
1
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2
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842
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
24 months ago Mikołaj Mierzejewski • 0
1
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2
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1.1k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
24 months ago Mikołaj Mierzejewski • 0
4
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10
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1.9k
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Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
2.0 years ago Yang Shi ▴ 10
3
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4
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1.7k
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Quantile Normalization after rma or not?
limma Microarray oligo
2.0 years ago Yang Shi ▴ 10
2
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2
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830
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Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
hta20transcriptcluster.db Microarray oligo
2.0 years ago Yang Shi ▴ 10
2
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5
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1.9k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi Microarray
2.0 years ago nhaus ▴ 40
0
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2
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800
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.1 years ago amir.rakhimov.b • 0
0
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2
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1.2k
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Time course experiment using limma
limma Multi-levelExperiments Microarray
2.1 years ago Wendy • 0
0
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12
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1.6k
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Annotating featureData to an affymetrix Xcel microarray
Microarray
2.1 years ago Adam • 0
0
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0
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634
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Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.2 years ago emily • 0
1
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7
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7.8k
views
Oligo RMA normalization : ERROR; return code from pthread_create() is 22
microarray normalization oligo HTA
updated 2.2 years ago by • 0 • written 5.3 years ago by ▴ 10
2
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5
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1.9k
views
Adjust for base line gene expression in limma model
limma Microarray
updated 2.4 years ago by 50k • written 2.4 years ago by • 0
4
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6
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1.2k
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RMA on different disease labels
rma background microarray normalization
updated 2.6 years ago by 66k • written 2.6 years ago by • 0
1
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1
reply
1.2k
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 2.7 years ago by 66k • written 2.7 years ago by ▴ 50
5
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2
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2.3k
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Query regarding the use of eBayes + topTable and treat + topTreat
Microarray limma DifferentialExpression
updated 21 months ago by 50k • written 2.8 years ago by ▴ 10
0
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1
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1.2k
views
Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 2.9 years ago by ▴ 80 • written 2.9 years ago by ▴ 10
3
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5
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1.7k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 2.9 years ago by 50k • written 3.0 years ago by • 0
1
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1
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1.3k
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How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
1
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2
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1.4k
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RUV4 for microarrays
RUV4 RUV Microarray
3.1 years ago Antonio • 0
0
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2
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2.1k
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How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.1 years ago waiyin0923 • 0
0
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1
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887
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 3.1 years ago by ★ 4.0k • written 3.1 years ago by • 0
1
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2
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1.3k
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How to quantile normalize arraystar lncRNA microarray data?
limma Microarray
3.2 years ago • updated 3.1 years ago a.deb • 0
3
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3
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1.4k
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Weird MAplot with DEGs lying along the diagonals
limma Microarray AgilentChip MA-plot Normalization
3.2 years ago FedeXander • 0
0
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2
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1.7k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.3 years ago jpwl2 • 0
6
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4
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1.3k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.3 years ago snijesh ▴ 20
1
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2
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1.4k
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How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions 3factors limma Microarray
3.3 years ago Dan ▴ 20
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9
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1.5k
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.3 years ago Daniel.Schnell • 0
0
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1
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1.3k
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Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.3 years ago by 50k • written 15.5 years ago by ▴ 10
5
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8
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2.5k
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how to annotate arrays
affy annotation microarray oligo
updated 3.5 years ago by 66k • written 8.8 years ago by • 0
0
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1
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1.1k
views
Normalisation of protein micro array data using VSN
microarray normalization protein
updated 3.6 years ago by ★ 13k • written 4.9 years ago by • 0
50 results • Page 1 of 1
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Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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