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Showing :
qvalue
•
reset
0
votes
3
replies
497
views
qvalue density function error
qvalue
8 weeks ago • updated 7 weeks ago
Tim
• 0
0
votes
1
reply
333
views
FDR via q-value
qvalue
updated 8 months ago by
James W. MacDonald
67k • written 8 months ago by
John
• 0
0
votes
0
replies
834
views
Storey's qvalue and interpreting p-value histogram
qvalue
2.8 years ago
mikhael.manurung
▴ 280
0
votes
0
replies
1.0k
views
installation of package 'qvalue' had non-zero exit status (
qvalue
2.9 years ago
natasha.tilich
• 0
4
votes
6
replies
1.8k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
5.0 years ago
manozawa
▴ 10
1
vote
4
replies
4.4k
views
Issue with qvalue function: Error in smooth.spline(lambda, pi0, df = smooth.df) : missing or infinite values in inputs are not allowed
qvalue
5.2 years ago
anamaria
▴ 10
9
votes
5
replies
5.2k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 6.2 years ago by
Steve Lianoglou
★ 13k • written 6.2 years ago by
Harrisonesmith
• 0
0
votes
1
reply
5.2k
views
Problem installing dartR: package 'qvalue' is not available for R version 3.5.1
qvalue
dartR
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
mumpalsson
• 0
2
votes
3
replies
6.7k
views
Package is not available for R version 3.5.0
qvalue
NBPSeq
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Gary
▴ 20
6
votes
2
replies
1.5k
views
Anomal pvalue distribution and qvalue calculation
qvalue
pvalue histogram
multiple testing correction
updated 6.5 years ago by
Nikos Ignatiadis
▴ 180 • written 6.5 years ago by
oliver.selmoni
▴ 10
1
vote
7
replies
1.9k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
7.8 years ago • updated 6.9 years ago
joe.d.moore.ii
• 0
1
vote
5
replies
2.0k
views
Hm... segfault when using qvalue 1.39.1, has anyone else encountered this?
qvalue
segfault
10.2 years ago • updated 6.9 years ago
Leonardo Collado Torres
★ 1.1k
8
votes
2
replies
5.8k
views
qvalue package throws error when used on any p-values but hedenfalk example
qvalue
updated 6.9 years ago by
Storey, John D.
▴ 100 • written 6.9 years ago by
ilikescience1
▴ 40
1
vote
2
replies
1.4k
views
qvalues lower than pvalues
qvalue
7.5 years ago
AR3513
• 0
0
votes
1
reply
1.8k
views
P-value distribution acceptable for qvalue
qvalue
pvalue histogram
updated 7.5 years ago by
Laurent Gatto
1.6k • written 7.5 years ago by
kerrypop
▴ 30
1
vote
1
reply
3.3k
views
Q value obtained from QValue package is lower than P value?
qvalue
pvalue
r
multiple comparisons
updated 7.9 years ago by
Storey, John D.
▴ 100 • written 7.9 years ago by
tombernardryan
▴ 60
1
vote
2
replies
3.1k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
8.1 years ago
tah340
• 0
1
vote
2
replies
5.4k
views
clusterProfiler : How works the q-value filtering ? What is a good cutoff ? Is this like an FDR ?
clusterprofiler
qvalue
updated 8.2 years ago by
Guangchuang Yu
★ 1.2k • written 8.2 years ago by
ZheFrench
▴ 60
69
votes
8
replies
59k
views
conceptual question about FDR, FDR adjusted p-value and q-value
fdr
qvalue
updated 8.2 years ago by
Gordon Smyth
52k • written 12.0 years ago by
Jack Luo
▴ 440
1
vote
2
replies
8.0k
views
Error in dyn.load(file, DLLpath = DLLpath, ...) :
R
qvalue
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
Lina
▴ 10
1
vote
2
replies
1.7k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund
pvalue
adjusted pvalue
qvalue
updated 8.9 years ago by
James W. MacDonald
67k • written 8.9 years ago by
Sameet Mehta
▴ 30
0
votes
4
replies
2.8k
views
Unable to load qvalue package
qvalue
9.0 years ago
lgvazdela
• 0
4
votes
5
replies
6.7k
views
Unable to use qvalue. Estimated pi0 is <=0
qvalue
usage qvalue
updated 9.1 years ago by
Gordon Smyth
52k • written 9.1 years ago by
robandclara
• 0
2
votes
6
replies
1.9k
views
Problem testing qvalue 2.0.0
qvalue
updated 9.4 years ago by
Storey, John D.
▴ 100 • written 9.4 years ago by
tillea
• 0
2
votes
5
replies
3.6k
views
How to use q.value cutt off in "decideTests" function for RNAseq differential expression analysis
rnaseq
decideTests
limma
qvalue
9.5 years ago
anver
• 0
2
votes
10
replies
3.1k
views
Package qvalue - can it be installed without TCL-TK support?
qvalue
qvalue
updated 9.7 years ago by
Storey, John D.
▴ 100 • written 10.6 years ago by
Giuseppe Gallone
▴ 170
0
votes
1
reply
1.6k
views
loading qvalue library causes R to abort
qvalue
qvalue
updated 10.5 years ago by
Dan Tenenbaum
★ 8.2k • written 10.5 years ago by
Guest User
★ 13k
0
votes
7
replies
4.3k
views
Q-values way smaller than P-values! Is that kosher?
qvalue
qvalue
updated 11.0 years ago by
Michael Love
43k • written 11.0 years ago by
Joshua Banta
▴ 30
0
votes
3
replies
2.4k
views
install qvalue
qvalue
qvalue
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
3 empty plots when I use qvalue
qvalue
qvalue
11.4 years ago
Emma Timmins-Schiffman
▴ 10
0
votes
5
replies
1.8k
views
Bioconductor's qvalue package not working on Macs!
qvalue
qvalue
updated 12.3 years ago by
Wolfgang Huber
★ 13k • written 12.3 years ago by
Josh B
▴ 30
0
votes
4
replies
8.3k
views
DESeq adjusted pvalue calculation / filtering data
Sequencing
Organism
qvalue
DESeq
Sequencing
Organism
qvalue
DESeq
updated 13.1 years ago by
Naomi Altman
★ 6.0k • written 13.1 years ago by
Markus Grohme
▴ 20
0
votes
0
replies
1.1k
views
qvalue package:pFDR generation from pvalues
qvalue
qvalue
13.7 years ago
viritha kaza
▴ 580
0
votes
9
replies
4.6k
views
unable to install qvalue..
qvalue
qvalue
updated 13.8 years ago by
Martin Morgan
25k • written 13.8 years ago by
Saurabh Bundela
▴ 30
0
votes
0
replies
1.3k
views
P>1 (edgeR and sage.test)
SAGE
qvalue
SAGE
qvalue
14.5 years ago
Naomi Altman
★ 6.0k
0
votes
3
replies
4.1k
views
Running R without X11?
webbioc
qvalue
webbioc
qvalue
updated 16.3 years ago by
ALok
▴ 170 • written 16.3 years ago by
Amy Johnson
▴ 40
0
votes
4
replies
1.6k
views
observations on affyprobeminer
GO
rat2302
cdf
affy
qvalue
GO
rat2302
cdf
affy
qvalue
updated 16.6 years ago by
Hongfang Liu
▴ 10 • written 16.6 years ago by
Mark W Kimpel
▴ 830
0
votes
3
replies
3.5k
views
SAM and qvalue
qvalue
qvalue
updated 18.1 years ago by
Holger Schwender
▴ 900 • written 18.1 years ago by
Nicolas Servant
▴ 260
0
votes
0
replies
1.2k
views
blocking in limma gives an estimability problem
GO
hgu95av2
Ruuid
multtest
affy
graph
limma
RBGL
qvalue
Category
affyio
GO
hgu95av2
18.5 years ago
Pedro López Romero
▴ 360
1
vote
1
reply
1.7k
views
adjPval and qvalue
qvalue
maanova
qvalue
maanova
updated 18.8 years ago by
James W. MacDonald
67k • written 18.8 years ago by
sabrina.shao
▴ 220
0
votes
0
replies
1.3k
views
affymetrix in maanova, code
qvalue
maanova
qvalue
maanova
19.0 years ago
Morten
▴ 300
0
votes
0
replies
1.5k
views
qvalue ( ) ERROR: The estimated pi0 <= 0....
qvalue
qvalue
20.1 years ago
SAURIN
★ 1.1k
0
votes
1
reply
1.1k
views
Limma background subtraction etc
limma
qvalue
limma
qvalue
updated 21.2 years ago by
Gordon Smyth
52k • written 21.2 years ago by
Jason Skelton
▴ 510
43 results • Page
1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
• 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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