Showing : software error • reset
16
votes
5
replies
14k
views
Error: Bioconductor version '3.8' requires R version '3.5'
software error
updated 5.0 years ago by ★ 6.5k • written 5.0 years ago by ▴ 10
12
votes
6
replies
12k
views
makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
software error maketxdbfrombiomart
updated 8.4 years ago by • 0 • written 8.5 years ago by ▴ 40
10
votes
9
replies
6.4k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 8.8 years ago by ▴ 20 • written 8.8 years ago by ▴ 60
9
votes
2
replies
8.8k
views
Using RSEM with tximport and DESeq2
deseq2 tximport software error bug
updated 2.6 years ago by 41k • written 7.2 years ago by ▴ 10
8
votes
8
replies
2.6k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 2.5 years ago by ▴ 290 • written 3.8 years ago by ▴ 40
7
votes
12
replies
1.9k
views
readGAlignmentPairs fail to read paired end data
software error
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 90
7
votes
8
replies
2.6k
views
Very small bug in DESeq2
software error
7.6 years ago arfranco ▴ 130
7
votes
14
replies
3.6k
views
Issue setting up BiocManager due to mgcv / clang?
software error
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
7
votes
2
replies
4.4k
views
Help in installing certain pacakges
software error install
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 40
6
votes
8
replies
7.8k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
6.5 years ago p.janitza ▴ 50
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 5.0 years ago by 50k • written 5.0 years ago by ▴ 60
6
votes
4
replies
2.8k
views
Gviz highlighted regions displaying behind main plot
gviz software error
updated 9.4 years ago by ★ 1.6k • written 9.4 years ago by ▴ 40
6
votes
2
replies
1.5k
views
csaw: Error in path.expand(bam.file) : invalid 'path' argument
csaw software error
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
6
votes
5
replies
7.9k
views
biomaRt: error using useDataset or useMart
software error biomart usemart usedataset
updated 6.4 years ago by ★ 6.5k • written 6.4 years ago by ▴ 40
6
votes
4
replies
1.2k
views
Missing KRAS in locateVariants or TxDb.Hsapiens.UCSC.hg19.knownGene?
software error annotation
updated 9.5 years ago by ★ 6.8k • written 9.5 years ago by ▴ 10
6
votes
12
replies
1.8k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek software error
4.5 years ago nils.hassel • 0
6
votes
4
replies
9.8k
views
converting integer to numeric
software error
8.3 years ago Angel ▴ 40
6
votes
11
replies
3.7k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.8 years ago by ▴ 40 • written 9.4 years ago by ▴ 200
6
votes
5
replies
859
views
Security process for Bioconductor
software error
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 30
6
votes
2
replies
1.7k
views
warning in R
software error
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 40
5
votes
4
replies
1.9k
views
DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
deseq2 software error
updated 3.8 years ago by 41k • written 3.8 years ago by ▴ 10
5
votes
11
replies
1.6k
views
Rsubread: change in behavior when accepting mixed paired end and single end files
software error Rsubread
updated 3.9 years ago by 50k • written 3.9 years ago by • 0
5
votes
5
replies
825
views
Installation: go to specific version of a package prompted
software error installation
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
5
votes
11
replies
2.5k
views
Certificate problem with ExperimentHub / AnnotationHub
software error curatedmetagenomicdata annotationhub experimenthub
updated 7.4 years ago by ★ 1.1k • written 7.4 years ago by ▴ 10
4
votes
5
replies
1.8k
views
Can't install msa on FreeBSD
software error FreeBSD msa
6.7 years ago spcohen2 ▴ 20
4
votes
4
replies
1.9k
views
.onLoad failed in loadNamespace() for 'BiocInstaller'
software error knitr
updated 7.8 years ago by 25k • written 7.9 years ago by ▴ 10
4
votes
10
replies
1.6k
views
DESeq2 interacting with agricolae
deseq2 software error
updated 7.7 years ago by ★ 13k • written 7.7 years ago by • 0
4
votes
5
replies
2.1k
views
how to get exons of multiple genes
software error
3.6 years ago • updated 3.5 years ago pegah.taklifi ▴ 30
4
votes
4
replies
6.4k
views
plotPCA in DESeq2
software error deseq2
3.9 years ago yueli7 ▴ 20
4
votes
2
replies
3.0k
views
Problem with locfit after update bioconductor to Bioconductor version 3.5
software error
updated 6.9 years ago by ★ 13k • written 6.9 years ago by ▴ 10
4
votes
3
replies
7.7k
views
Error message that there is no package called Biobase
software error
6.8 years ago mdroog • 0
4
votes
8
replies
2.1k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 15 months ago by 65k • written 3.9 years ago by ▴ 30
4
votes
17
replies
5.4k
views
Upgrade to 3.1 error
software error
updated 8.8 years ago by ▴ 670 • written 9.0 years ago by ▴ 10
4
votes
6
replies
4.4k
views
Cannot Install BSgenome.Hsapiens.UCSC.hg19
software error package installation
7.0 years ago alongalor ▴ 10
4
votes
5
replies
1.9k
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
4
votes
5
replies
807
views
GeneRfold not available anymore ?
GeneRfold software error
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
4
votes
3
replies
870
views
Does anyone experience expired certificates of BioConductor?
software error
updated 4.6 years ago by 3.8k • written 4.6 years ago by ▴ 20
4
votes
4
replies
1.5k
views
Error in getBM
software error
updated 4.8 years ago by ▴ 20 • written 4.8 years ago by ▴ 20
4
votes
1
reply
812
views
Cannot determine whether maintainer is subscribed to the bioc-devel mailing list (requires admin credentials).
software error
updated 4.8 years ago by ★ 6.5k • written 4.8 years ago by ▴ 10
4
votes
3
replies
3.1k
views
TxDb error: external pointer is not valid
software error GenomicFeatures
4.6 years ago O. William McClung • 0
4
votes
2
replies
1.8k
views
The Mac version of R always reports an error when installing WGCNA
software error WGCNA mac
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
4
votes
6
replies
2.4k
views
mzR (2.8.1) Rcpp (0.12.10) compiler linker issue in Bioconductor 3.4, R 3.3.3
software error mzR Rcpp readMSData2 bioconductor
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
4
votes
5
replies
1.4k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2 install software error
3.8 years ago mja18 ▴ 40
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
3
votes
4
replies
1.9k
views
Rhdf5lib Installation Problem - cp: cannot stat 'hdf5/c++/src/.libs/libhdf5_cpp.a'
software error Rhdf5lib
5.0 years ago z.navidi90 ▴ 10
3
votes
3
replies
1.3k
views
compatibility of R-BioC for Mac OS X Yosemite?
software error
8.9 years ago • updated 8.8 years ago dnaseq ▴ 10
3
votes
5
replies
1.2k
views
Run DESeq with only a handful of genes
deseq2 Small number of genes software error
7.9 years ago xinlian.zhang25 • 0
3
votes
2
replies
5.7k
views
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
software error org.hs.eg.db
updated 9.4 years ago by 25k • written 9.4 years ago by • 0
3
votes
4
replies
5.1k
views
Loading the necessary libraries in R
software error
8.9 years ago Angel ▴ 40
3
votes
9
replies
4.7k
views
topGO "invalid argument to unary operator"
software error topgo
updated 5.5 years ago by 65k • written 5.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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