Showing : visualization • reset
8
votes
12
replies
8.8k
views
EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 20
5
votes
11
replies
3.1k
views
Visualization of negative log CPM values
Visualization Normalization ggplot2 edgeR
written 11 months ago by ▴ 20
5
votes
11
replies
1.5k
views
Visualization tool for GC-bias in SE data?
GC-bias ALPINE visualization
updated 3.9 years ago by 42k • written 3.9 years ago by ▴ 20
0
votes
9
replies
1.9k
views
visualizing alignment without realignment
msa alignment visualization
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
8
replies
12k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2 pvalue visualization enhancedvolcano rnaseq
updated 5.2 years ago by 42k • written 5.2 years ago by • 0
0
votes
7
replies
2.2k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 7.7 years ago by • 0 • written 14.0 years ago by ★ 1.6k
0
votes
7
replies
4.9k
views
Visualization of rownames in the heatmap.2 function for selected DE genes of a microarray dataset
heatmap.2 gplots differential gene expression visualization
9.1 years ago svlachavas ▴ 830
0
votes
6
replies
3.3k
views
Fwd: WGCNA: labeledHeatmap and verboseScatterplot correlations and p-values are not the same
Visualization Visualization
9.8 years ago • updated 9.7 years ago Peter Langfelder ★ 3.0k
4
votes
6
replies
1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
24 months ago • updated 23 months ago mohammedtoufiq91 ▴ 10
0
votes
6
replies
2.9k
views
Gviz::plotTracks for BiomartGeneRegionTrack() produces empty plots
gviz visualization
9.3 years ago Asta Laiho ▴ 120
3
votes
5
replies
2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ▴ 830
0
votes
5
replies
2.6k
views
Gene Symbol with Pathview
pathview bioconductor kegg visualization
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by • 0
0
votes
5
replies
1.6k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 11.2 years ago by ▴ 420 • written 11.2 years ago by ★ 11k
0
votes
5
replies
3.5k
views
Adjacency to network using R
Visualization Network convert Visualization Network convert
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 120
0
votes
5
replies
1.9k
views
Question regarding cellhts2 output
Normalization Visualization PROcess cellHTS2 ASSIGN Normalization Visualization PROcess
11.1 years ago maziz@tgen.org ▴ 70
0
votes
5
replies
1.6k
views
BED15 format for rtracklayer
Microarray Visualization rtracklayer Microarray Visualization rtracklayer
updated 14.8 years ago by ▴ 620 • written 14.8 years ago by ▴ 500
0
votes
4
replies
1.3k
views
Pathview published in Bioinformatics
Visualization pathview Visualization pathview
10.9 years ago Luo Weijun ★ 1.6k
0
votes
4
replies
1.4k
views
Deseq2 problem visualizing gene expression with batch corrected values
deseq2 limma differential expression visualization
updated 5.9 years ago by 42k • written 5.9 years ago by • 0
2
votes
4
replies
1.6k
views
chimeraviz - import own fusion file for visualization
visualization chimeraviz
updated 2.8 years ago by • 0 • written 6.8 years ago by ▴ 10
0
votes
4
replies
8.9k
views
Agilent 2-color Microarray data analysis tutorial
Microarray Visualization Clustering Microarray Visualization Clustering
updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 140
0
votes
4
replies
1.4k
views
rtracklayer can't access hg38 on UCSC?
rtracklayer Visualization
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
1
vote
3
replies
1.9k
views
Visualizing gene counts and variance stabilization
deseq2 rnaseq variancestabilizingtransformation visualization
updated 8.9 years ago by 42k • written 8.9 years ago by ▴ 40
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 200 • written 3.5 years ago by • 0
0
votes
3
replies
2.3k
views
RNAseq read coverage plot: What tool?
rnaseq visualization plotcoveragehist
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 130
3
votes
3
replies
1.1k
views
how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger clustering visualization
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 10
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by • 0
0
votes
2
replies
324
views
Missing Band on Volcano Plot from DESeq2
DESeq2 Visualization DifferentialExpression
updated 7 weeks ago by 42k • written 7 weeks ago by • 0
0
votes
2
replies
3.5k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by ▴ 130
2
votes
2
replies
1.1k
views
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2 PCAplot Visualization
updated 5.3 years ago by 42k • written 5.3 years ago by • 0
2
votes
2
replies
4.3k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.1 years ago • updated 3.5 years ago tcalvo ▴ 90
1
vote
2
replies
2.7k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 8.9 years ago by ▴ 180 • written 8.9 years ago by ▴ 130
0
votes
2
replies
905
views
ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
19.1 years ago Seth Falcon ★ 7.4k
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 10
0
votes
2
replies
870
views
ggplot2 bar plot
R Visualization ggplot2
19 months ago Jitendra ▴ 10
0
votes
2
replies
2.1k
views
What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Visualization graph limma Visualization graph limma
updated 10.2 years ago by 50k • written 10.3 years ago by ▴ 30
1
vote
2
replies
1.2k
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by • 0
0
votes
2
replies
2.5k
views
Questions about multi-factor contrast setting in DESeq2
GO Visualization Clustering limma edgeR DESeq2 GO Visualization Clustering limma edgeR
updated 10.2 years ago by ▴ 380 • written 10.2 years ago by 42k
0
votes
2
replies
1.6k
views
Visualizing GOstats HyperGTest results
GO Visualization GOstats GO Visualization GOstats
updated 16.3 years ago by 65k • written 16.3 years ago by ▴ 600
0
votes
2
replies
1.5k
views
FlowViz graphics problems
Microarray Visualization graph flowCore flowViz Microarray Visualization graph flowCore
updated 14.9 years ago by ▴ 340 • written 14.9 years ago by ▴ 20
0
votes
2
replies
1.4k
views
proposed: a bridge between R and Cytoscape
Visualization Network graph Visualization Network graph
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ★ 1.1k
0
votes
2
replies
2.6k
views
DESeq2 error
Visualization Clustering DESeq2 Visualization Clustering DESeq2
10.3 years ago Michael Love 42k
0
votes
1
reply
1.3k
views
Survey on interactive visualization and Bioconductor
visualization epivizr
7.9 years ago Hector Corrada Bravo ▴ 60
2
votes
1
reply
3.5k
views
Heatmap function
Visualization Visualization
updated 20.5 years ago by ▴ 210 • written 20.5 years ago by ▴ 150
0
votes
1
reply
1.5k
views
ChIPseeker gene body plot
chipseeker visualization
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
0
votes
1
reply
721
views
comparative genomics
Visualization Visualization
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 30
0
votes
1
reply
1.5k
views
Graphic representation of mroast results
mroast visualization
8.9 years ago Elena Serrano ▴ 30
0
votes
1
reply
1.4k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
1
reply
1.0k
views
status of visnab
Visualization ggbio Gviz Visualization ggbio Gviz
updated 11.0 years ago by ▴ 420 • written 11.0 years ago by ▴ 410
50 results • Page 1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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