0
votes
3
replies
67
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 7 hours ago by ▴ 80 • written 10 hours ago by • 0
2
votes
7
replies
357
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
9 days ago • updated 6 days ago sajadahmad41454 • 0
0
votes
0
replies
99
views
how to do Differential splicing from SGSeq analysis
DEXSeq SGSeq
23 days ago • updated 18 days ago Sara • 0
0
votes
3
replies
219
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 15 days ago by ★ 4.1k • written 16 days ago by • 0
1
vote
0
replies
318
views
News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
8 weeks ago • updated 3 days ago shepherl 3.9k
0
votes
1
reply
40
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
updated 1 hour ago by ★ 1.4k • written 13 hours ago by • 0
0
votes
0
replies
13
views
Spam: Unveiling Unmatched Best Custom Patches
SIMAT
1 day ago oliverelijhan 0
4
votes
0
replies
134
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
16 days ago shepherl 3.9k
0
votes
1
reply
33
views
DESeq2- Mysterious interaction suppresses DEGs
DESeq2 PCAplot RNA-Seq DesignModel
6 hours ago shaunpeterson • 0
0
votes
0
replies
105
views
I am trying to detect alternative splicing.
ASpli
27 days ago Sebashish • 0
1
vote
2
replies
176
views
Error in champ.load(): The following specified files do not exist
ChAMP
4 weeks ago • updated 29 days ago Sherin • 0
0
votes
0
replies
142
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools TCGA
22 days ago • updated 14 days ago glaciya2018 • 0
0
votes
0
replies
93
views
News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
17 days ago Maria Doyle ▴ 70
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS WGBS coverage
updated 8 days ago by • 0 • written 6.6 years ago by ▴ 30
0
votes
2
replies
265
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
24 days ago • updated 22 days ago shuwangxinze1996 • 0
0
votes
1
reply
58
views
Retrieving ceRNA data from the starBase or ENCORI Web API
microRNA starBase ceRNA WebAPI ENCORI
3 days ago • updated 2 days ago Bhavya • 0
0
votes
0
replies
89
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
15 days ago yvonneh • 0
0
votes
3
replies
148
views
ChAMP installation issue
Cha ChAMP
4 days ago • updated 3 days ago e1271094 • 0
0
votes
1
reply
129
views
Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
written 15 days ago by • 0
0
votes
0
replies
45
views
QSEA- Extraction of Normalized methylation across the samples
qsea ngsReports correlation
3 days ago Researcher • 0
1
vote
2
replies
234
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
29 days ago Le • 0
0
votes
0
replies
135
views
Empty table plot using plotGseaTable()
fgsea
16 days ago • updated 14 days ago Chris ▴ 10
0
votes
0
replies
31
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq WGCNA
1 day ago k200987 • 0
0
votes
0
replies
54
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
1 day ago Anton01 • 0
0
votes
0
replies
39
views
ReactomeGSA for RNASeq
ReactomeGSA BatchEffect RNASeqData
1 day ago Shaimaa Gamal • 0
0
votes
0
replies
82
views
News: Interested in the analysis of Spatial Omics data?
tidySpatialExperiment SpatialExperiment MoleculeExperiment
24 days ago info ▴ 10
1
vote
3
replies
888
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler RNASeq
updated 23 days ago by ★ 1.2k • written 14 months ago by ▴ 10
0
votes
0
replies
32
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO KEGG gage pathview
1 day ago danalvoronov ▴ 10
0
votes
0
replies
97
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
23 days ago Dario Strbenac ★ 1.5k
1
vote
2
replies
221
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
4 days ago • updated 1 day ago BioinfGuru ▴ 30
0
votes
0
replies
94
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
18 days ago Chris ▴ 10
0
votes
4
replies
263
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
4 weeks ago • updated 27 days ago lonn • 0
0
votes
0
replies
28
views
Difference in Contrast in DiffBind
DiffBind
2 days ago zzrammal • 0
0
votes
0
replies
83
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
15 days ago Ian D. ▴ 70
0
votes
0
replies
67
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer ShinyApps
8 days ago neilzhao ▴ 30
1
vote
0
replies
346
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
28 days ago BioinfGuru ▴ 30
0
votes
0
replies
95
views
flowStats for CyTOF
flowStats
15 days ago tholmes • 0
0
votes
2
replies
83
views
Problem finding certain variables when importing a public database GSE73103
GSEABase GenomicDistributionsData
4 days ago • updated 3 days ago Yveto • 0
0
votes
0
replies
68
views
Treeio as.treedata function seq lenght error
treeio
9 days ago nromerov • 0
0
votes
0
replies
132
views
Warning while loading DEP package
DEP
updated 29 days ago by 3.9k • written 29 days ago by • 0
0
votes
8
replies
381
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 22 days ago by ★ 1.4k • written 24 days ago by • 0
0
votes
2
replies
281
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
6 weeks ago • updated 28 days ago isaac.vock • 0
192 results • Page 4 of 4
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
WEHI, Melbourne, Australia, 33 minutes ago
United States, 53 minutes ago
United States, 57 minutes ago
San Diego, 1 hour ago
Sweden, 1 hour ago
Traffic: 692 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6