Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
835
views
Job:
Bioinformatics Engineer
Engineering
4.0 years ago
simonsF.careers
• 0
0
votes
0
replies
3.1k
views
How to solve Error in ggplot could not find function "+<-"?
ggplot
4.0 years ago
nattzy94
▴ 20
2
votes
11
replies
12k
views
ClusterProfiler enrichGO function leads to different enrichment results in different computers, while the code and gene list keep same
clusterProfiler
4.0 years ago
liuzhy
▴ 10
1
vote
3
replies
1.7k
views
Limma and Names Assignment
ASSIGN
ASSIGN
written 14.2 years ago by
Voke AO
▴ 760
1
vote
0
replies
2.3k
views
Job:
Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics
job
germany
4.0 years ago
sergisayolspuig
▴ 80
0
votes
1
reply
1.4k
views
Not obtaining specified GO BPs in compareCluster dotplot
clusterProfiler
updated 4.0 years ago by
Guido Hooiveld
★ 4.1k • written 4.1 years ago by
Jordan
• 0
0
votes
1
reply
1.6k
views
Compare TCGA-PAAD with GTEx gene expression
TCGAbiolinks
updated 10 months ago by
Jane
• 0 • written 4.0 years ago by
constantinosdem
• 0
0
votes
1
reply
1.6k
views
Extract barcodes from all cells that belong to a scRNA-seq dataset neighborhood
miloR
updated 4.0 years ago by
michael.morgan
• 0 • written 4.0 years ago by
thkapell
▴ 10
6
votes
19
replies
8.9k
views
DiffBind GreyListChIP error: Error: BiocParallel errors
DiffBind
updated 2.4 years ago by
liz.lamarca
• 0 • written 4.4 years ago by
kwangbom
▴ 10
2
votes
5
replies
2.8k
views
Adjust for base line gene expression in limma model
limma
Microarray
updated 4.0 years ago by
Gordon Smyth
53k • written 4.0 years ago by
S
• 0
0
votes
0
replies
1.3k
views
News:
BioC2022 Seattle July 27-29 hybrid conference organizing committee
bioc2022
Conference
4.0 years ago
Levi Waldron
★ 1.1k
1
vote
1
reply
2.6k
views
Msa package clustal-omega
msa
updated 4.0 years ago by
Gerhard Thallinger
▴ 180 • written 4.1 years ago by
Radwa
• 0
0
votes
0
replies
1.1k
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
4.0 years ago
Ahdee
▴ 60
4
votes
4
replies
3.6k
views
Unlog transformed data in DESeq2
RNASeq
DESeq2
vst
rlog
Normalization
updated 2.1 years ago by
Gordon Smyth
53k • written 4.1 years ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
1.1k
views
dupRadar density scatter plot interpretation problem
dupRadar
4.1 years ago • updated 4.0 years ago
Greta
• 0
2
votes
2
replies
1.8k
views
velociraptor preparation
SingleCellExperiment
singlecell
velociraptor
scvelo
updated 4.0 years ago by
ATpoint
★ 5.0k • written 4.1 years ago by
Pietro
▴ 40
0
votes
1
reply
1.7k
views
small RNA counts
counts
SmallRNA
Normalization
updated 4.1 years ago by
hauken_heyken
▴ 80 • written 4.2 years ago by
k___
▴ 30
3
votes
2
replies
1.2k
views
P-values change 100-fold with only a single count changed
DESeq2
4.1 years ago • updated 4.0 years ago
Andrey
• 0
3
votes
5
replies
2.9k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 4.1 years ago by
Hervé Pagès
16k • written 4.1 years ago by
jon.klonowski
▴ 40
0
votes
1
reply
2.2k
views
GSVA package normalization on gene-length ?
GSVA
updated 4.1 years ago by
Robert Castelo
★ 3.4k • written 4.1 years ago by
xanthexu
• 0
0
votes
1
reply
1.3k
views
Analyzing RNA-seq data with DESeq2 Tutorial - tximeta Package Causing Error in UseMethod("filter_")
tximeta
UseMethod("filter_")
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
dmbergau
• 0
1
vote
1
reply
2.8k
views
[SOLVED] Problem with the installation of Rgraphviz
Graphviz
Rgraphviz
4.1 years ago
c.bell.lu
• 0
0
votes
2
replies
1.8k
views
DESeqDataSet design issue
DESeq
DESeq2
4.1 years ago
matthew.valentine
• 0
2
votes
1
reply
1.8k
views
Converting vst-normalized gene expression counts back after correcting for tumor purity
Inverse-VST
Tumor-Purity
VST
DESeq2
Normalization
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
Bioinf_sc
• 0
2
votes
6
replies
5.4k
views
Data frame to a nested list in R
RBioinf
4.1 years ago
bbhatt
• 0
6
votes
4
replies
11k
views
what the test method for enrichGO in clusterProfiler?
clusterProfiler
4.1 years ago • updated 4.0 years ago
xiaofeiwang18266
▴ 60
0
votes
1
reply
1.0k
views
RNA-Seq Workflow Vignette - library(airway) Missing "quants" directory
RNASeq
DESeq2
airway
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
dmbergau
• 0
0
votes
3
replies
2.1k
views
transcripts are not true in TxDb.Hsapiens.UCSC.hg38.knownGene
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 4.1 years ago by
Hervé Pagès
16k • written 4.1 years ago by
BioEpi
• 0
1
vote
1
reply
1.3k
views
mixOmics 3D scatterplot for individuals not displaying
plotIndiv
3D
mixOmics
PCA
4.1 years ago
Blobby123
• 0
0
votes
1
reply
1.2k
views
LSTM time series forecasting of covid-19 data
#deeplearning
#python
#lstm
#machinelearning
updated 4.1 years ago by
Gerhard Thallinger
▴ 180 • written 4.1 years ago by
AbuZar
• 0
3
votes
3
replies
2.7k
views
DESeq2 - batch, condition and tissue information
DESeq2
4.1 years ago
Ela__77
▴ 10
0
votes
0
replies
1.0k
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
4.1 years ago
sanrie10
• 0
0
votes
0
replies
938
views
Job:
Summer Research Assistant/Associate, Center for Computational Biology
Internship
4.1 years ago
simonsF.careers
• 0
0
votes
9
replies
2.6k
views
DESeq2 analyze MeRIP-seq
DESeq2
MeRIP-seq
updated 3.2 years ago by
Michael Love
43k • written 4.1 years ago by
BioEpi
• 0
0
votes
2
replies
1.8k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 2.8 years ago by
Michelle
• 0 • written 4.1 years ago by
gamma.jian
▴ 10
3
votes
2
replies
2.2k
views
Filtering low coverage RRBS counts results in few reads. Any alternatives?
limma
edgeR
updated 4.1 years ago by
gamma.jian
▴ 10 • written 4.1 years ago by
altintas.ali
• 0
3
votes
5
replies
3.8k
views
limma-trend and voom results do not agree
limma
limma-trend
voom
RNASeq
4.1 years ago
Tyler Sagendorf
▴ 10
0
votes
3
replies
2.3k
views
NA values for mitochondrial gene percentage
Seurat
scRNAseq
4.1 years ago
zahra.mesri95
• 0
1
vote
1
reply
992
views
limma KNN classification with voom-transformed data
limma
KNN
updated 4.1 years ago by
Steve Lianoglou
★ 13k • written 4.1 years ago by
andreas.scherer
• 0
1
vote
0
replies
1.2k
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
4.1 years ago
mchakiachvili
▴ 20
0
votes
0
replies
1.1k
views
Job:
Research Scientist/Senior Research Scientist - National Center for Supercomputing Applications, Univ. of Illinois
supercomputing
bioinformatics
VariantCalling
healthcare
Agriculture
4.1 years ago
Jenny Drnevich
★ 2.0k
4
votes
2
replies
6.7k
views
Install package without updating dependent package
Install
AnnotationForge
4.1 years ago
亮
• 0
4
votes
8
replies
3.1k
views
Problem converting transcript to genomic coordinates with Annotation Hub
AnnotationHub
4.1 years ago • updated 3.6 years ago
nattzy94
▴ 20
1
vote
2
replies
2.0k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
4.1 years ago
m.glymenaki
• 0
0
votes
1
reply
1.0k
views
readIDAT output to beadarray package input file
Beadarray
readIDAT
updated 4.1 years ago by
James W. MacDonald
68k • written 4.1 years ago by
Đạt
• 0
1
vote
3
replies
1.2k
views
interpretation complex design limma
limma
updated 4.1 years ago by
Gordon Smyth
53k • written 4.1 years ago by
dfrtyu
• 0
2
votes
4
replies
2.4k
views
DiffBind: dba.plotProfile(profiles)
DiffBind
updated 22 months ago by
marcusn
▴ 10 • written 4.1 years ago by
bhanu.chandra1
• 0
1
vote
3
replies
4.9k
views
Error in installing org.Hs.eg.db
org.Hs.eg.db
org.H
4.1 years ago
2041792073
• 0
2
votes
1
reply
1.3k
views
Difference in output of logicle transform in different languages
flowCore
updated 3.8 years ago by
Eduardo
• 0 • written 4.1 years ago by
markkelly1983
▴ 20
3
votes
4
replies
1.5k
views
DESEQ2 Results log2fold and pvalue changes after removing genes
DESeq2
4.1 years ago
Bine
▴ 50
46,703 results • Page
104 of 935
Recent ...
Replies
Answer: ATACseq rudimentary questions
by
Kevin Blighe
★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
by
Gordon Smyth
53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Votes
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Awards
• All
Popular Question
to
ZheFrench
▴ 60
Teacher
to
Gordon Smyth
53k
Popular Question
to
shepherl
4.2k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Locations
• All
The Cave, 181 Longwood Avenue, Boston, USA,
1 hour ago
United States,
2 hours ago
United States,
3 hours ago
The city by the bay,
4 hours ago
United States,
4 hours ago
Traffic: 1075 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6