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How to solve Error in ggplot could not find function "+<-"?
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ClusterProfiler enrichGO function leads to different enrichment results in different computers, while the code and gene list keep same
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4.0 years ago liuzhy ▴ 10
1
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3
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Limma and Names Assignment
ASSIGN ASSIGN
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
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4.0 years ago sergisayolspuig ▴ 80
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Not obtaining specified GO BPs in compareCluster dotplot
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updated 4.0 years ago by ★ 4.1k • written 4.1 years ago by • 0
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Compare TCGA-PAAD with GTEx gene expression
TCGAbiolinks
updated 10 months ago by • 0 • written 4.0 years ago by • 0
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Extract barcodes from all cells that belong to a scRNA-seq dataset neighborhood
miloR
updated 4.0 years ago by • 0 • written 4.0 years ago by ▴ 10
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DiffBind GreyListChIP error: Error: BiocParallel errors
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Adjust for base line gene expression in limma model
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updated 4.0 years ago by 53k • written 4.0 years ago by • 0
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News: BioC2022 Seattle July 27-29 hybrid conference organizing committee
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4.0 years ago Levi Waldron ★ 1.1k
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Msa package clustal-omega
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Is it possible to output ensembl id for annotatr build_annotations basicgenes?
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4.0 years ago Ahdee ▴ 60
4
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4
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Unlog transformed data in DESeq2
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dupRadar density scatter plot interpretation problem
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4.1 years ago • updated 4.0 years ago Greta • 0
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velociraptor preparation
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small RNA counts
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updated 4.1 years ago by ▴ 80 • written 4.2 years ago by ▴ 30
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P-values change 100-fold with only a single count changed
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4.1 years ago • updated 4.0 years ago Andrey • 0
3
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5
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Splitting a TxDB or GRanges by Chromosome
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updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 40
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GSVA package normalization on gene-length ?
GSVA
updated 4.1 years ago by ★ 3.4k • written 4.1 years ago by • 0
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Analyzing RNA-seq data with DESeq2 Tutorial - tximeta Package Causing Error in UseMethod("filter_")
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updated 4.1 years ago by 43k • written 4.1 years ago by • 0
1
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1
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2.8k
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[SOLVED] Problem with the installation of Rgraphviz
Graphviz Rgraphviz
4.1 years ago c.bell.lu • 0
0
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2
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DESeqDataSet design issue
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4.1 years ago matthew.valentine • 0
2
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1
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1.8k
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Converting vst-normalized gene expression counts back after correcting for tumor purity
Inverse-VST Tumor-Purity VST DESeq2 Normalization
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
2
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6
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Data frame to a nested list in R
RBioinf
4.1 years ago bbhatt • 0
6
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4
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11k
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what the test method for enrichGO in clusterProfiler?
clusterProfiler
4.1 years ago • updated 4.0 years ago xiaofeiwang18266 ▴ 60
0
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1
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1.0k
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RNA-Seq Workflow Vignette - library(airway) Missing "quants" directory
RNASeq DESeq2 airway
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
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3
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2.1k
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transcripts are not true in TxDb.Hsapiens.UCSC.hg38.knownGene
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 4.1 years ago by 16k • written 4.1 years ago by • 0
1
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1
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1.3k
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mixOmics 3D scatterplot for individuals not displaying
plotIndiv 3D mixOmics PCA
4.1 years ago Blobby123 • 0
0
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1
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1.2k
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LSTM time series forecasting of covid-19 data
#deeplearning #python #lstm #machinelearning
updated 4.1 years ago by ▴ 180 • written 4.1 years ago by • 0
3
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DESeq2 - batch, condition and tissue information
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4.1 years ago Ela__77 ▴ 10
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0
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NanoStringDiff
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4.1 years ago sanrie10 • 0
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Job: Summer Research Assistant/Associate, Center for Computational Biology
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4.1 years ago simonsF.careers • 0
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DESeq2 analyze MeRIP-seq
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HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd HiCDCPlus
updated 2.8 years ago by • 0 • written 4.1 years ago by ▴ 10
3
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2
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2.2k
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Filtering low coverage RRBS counts results in few reads. Any alternatives?
limma edgeR
updated 4.1 years ago by ▴ 10 • written 4.1 years ago by • 0
3
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5
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3.8k
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limma-trend and voom results do not agree
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4.1 years ago Tyler Sagendorf ▴ 10
0
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3
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NA values for mitochondrial gene percentage
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4.1 years ago zahra.mesri95 • 0
1
vote
1
reply
992
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limma KNN classification with voom-transformed data
limma KNN
updated 4.1 years ago by ★ 13k • written 4.1 years ago by • 0
1
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0
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1.2k
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News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
4.1 years ago mchakiachvili ▴ 20
0
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0
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Job: Research Scientist/Senior Research Scientist - National Center for Supercomputing Applications, Univ. of Illinois
supercomputing bioinformatics VariantCalling healthcare Agriculture
4.1 years ago Jenny Drnevich ★ 2.0k
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2
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Install package without updating dependent package
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4.1 years ago 亮 • 0
4
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8
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Problem converting transcript to genomic coordinates with Annotation Hub
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4.1 years ago • updated 3.6 years ago nattzy94 ▴ 20
1
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2
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Design formula in DESeq2
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4.1 years ago m.glymenaki • 0
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readIDAT output to beadarray package input file
Beadarray readIDAT
updated 4.1 years ago by 68k • written 4.1 years ago by • 0
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interpretation complex design limma
limma
updated 4.1 years ago by 53k • written 4.1 years ago by • 0
2
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4
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DiffBind: dba.plotProfile(profiles)
DiffBind
updated 22 months ago by ▴ 10 • written 4.1 years ago by • 0
1
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3
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Error in installing org.Hs.eg.db
org.Hs.eg.db org.H
4.1 years ago 2041792073 • 0
2
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1
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Difference in output of logicle transform in different languages
flowCore
updated 3.8 years ago by • 0 • written 4.1 years ago by ▴ 20
3
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DESEQ2 Results log2fold and pvalue changes after removing genes
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4.1 years ago Bine ▴ 50
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