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710
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Design formula, numeric contrast, and lfcshrink in deseq2
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updated 19 months ago by 43k • written 19 months ago by ▴ 10
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BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
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19 months ago Reese • 0
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DESeq2 returns results for group with just one replicate
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19 months ago devarti.mahakalkar • 0
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GESA with certain gene list returns no result with human genom, but many result with mouse genom.
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19 months ago sawa • 0
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Single Cell Experiment : Differential Expression "List of length 0" - Help!
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19 months ago vohara4 • 0
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19 months ago Rachael • 0
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970
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How can I get gseGO to return all GO terms tested?
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Error in drawHeatmap function
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19 months ago Johanna • 0
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4
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21 months ago • updated 19 months ago isaac.vock • 0
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Including infectivity information to RNA-Seq analysis
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updated 19 months ago by 68k • written 19 months ago by ▴ 50
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error loading collectTRI regulon
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19 months ago silvaesilva.da • 0
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Multiple factor DSEq2 result generates weird volcano plot
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updated 19 months ago by ★ 5.0k • written 2.8 years ago by ▴ 20
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EnhancedVolcano results in an empty plot
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19 months ago Patadù ▴ 20
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News: Stop mirror service
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updated 19 months ago by 4.3k • written 19 months ago by • 0
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chemmineOB install help
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19 months ago jrbald04 • 0
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19 months ago BioinfGuru ▴ 70
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Can I adjust weights by group in dreamlet(), like in voomByGroup(), with a random effect?
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936
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Recount3 error downloading data
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updated 19 months ago by ★ 1.1k • written 23 months ago by • 0
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847
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When I tried to use the functions from the celldex package to fetch information, I encountered the following error. How can I resolve this?"
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updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
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19 months ago landenshanie ▴ 40
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2
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19 months ago a_p • 0
1
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5
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updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
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Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() from AnnotationForge
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19 months ago Ozan • 0
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2
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Interpretation of GSVA with absRanking=TRUE
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19 months ago gad.abraham • 0
0
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1
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765
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Can we compare 3 different experimental conditions with DESeq2?
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updated 19 months ago by ★ 1.4k • written 19 months ago by • 0
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691
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updated 19 months ago by 68k • written 19 months ago by • 0
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using tximport with STAR transcript-quantification output
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19 months ago JG13 • 0
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0
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STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
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updated 19 months ago by ▴ 110 • written 19 months ago by • 0
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4
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Add mask to BSgenome
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19 months ago shraddha.pai • 0
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0
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does TMixClust recognise biological replicates
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19 months ago ta_awwad ▴ 10
0
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1
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multiple condition issue running DESeq
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updated 19 months ago by 43k • written 19 months ago by • 0
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Create count matrix from multible quant sf files from different directories
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19 months ago JG13 • 0
2
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2
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Control group between 2 batches have different expression in RNAseq data
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updated 19 months ago by ▴ 10 • written 20 months ago by • 0
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How to remove batch effect to combine RNAseq data from 2 different experiments?
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How to compare subset of samples from VCF files
VCF VariantAnnotation
updated 19 months ago by 53k • written 19 months ago by • 0
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3
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786
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updated 19 months ago by 53k • written 19 months ago by ▴ 10
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0
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How to fix fix $PnR in flowCore
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updated 19 months ago by 68k • written 19 months ago by • 0
1
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia BioCAsia Conferences Events BioC
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0
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0
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481
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Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
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updated 19 months ago by 68k • written 19 months ago by • 0
0
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3
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1.0k
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updated 19 months ago by 68k • written 19 months ago by • 0
1
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1
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518
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makeExampleDESeqDataSet using pilot data
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
0
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0
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EuroBioC2024 Registration is Open!
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19 months ago Maria Doyle ▴ 110
46,726 results • Page 22 of 935
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Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
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It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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I updated the above answer today.
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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