1
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1
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2.4k
views
DESeq2 independent filtering fails to filter low counts
deseq2
updated 9.6 years ago by 43k • written 9.7 years ago by • 0
1
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1
reply
1.0k
views
DESeq2 feature request: parallelised refitWithoutOutliers()
DESeq2
updated 9.6 years ago by 43k • written 9.7 years ago by • 0
0
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3
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Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
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updated 9.6 years ago by ▴ 350 • written 9.7 years ago by ▴ 130
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10
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ensembldb: ensDbFromGtf error with ensembl version 74
ensembldb
updated 9.6 years ago by ★ 2.1k • written 9.7 years ago by ▴ 90
1
vote
1
reply
2.0k
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Loading a precomputed interaction matrix into diffHiC
diffhic
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 130
0
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3
replies
2.0k
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Error in Summary Factor using DiffBind
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updated 9.7 years ago by ▴ 670 • written 9.7 years ago by • 0
0
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0
replies
898
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Can i use protein point mutation text mining as bioinformatic tool
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9.7 years ago krababah • 0
0
votes
13
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3.2k
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Gage and setp argument
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9.7 years ago peter.chernek • 0
2
votes
4
replies
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biomaRt File './ensembl_mart_84/mmusculus_gene_ensembl__translation__main.MYD' not found (Errcode: 13)
biomart
9.7 years ago Darya Vanichkina ▴ 130
0
votes
1
reply
2.2k
views
Primer-blast with bioconductor packages
primer blast
updated 9.7 years ago by 16k • written 9.7 years ago by ▴ 40
1
vote
3
replies
2.6k
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WGCNA clustering configuration
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updated 9.7 years ago by ★ 3.0k • written 9.7 years ago by ▴ 760
0
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0
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set gRNA.pattern and install CRISPRseek
crisprseek
9.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.1k
views
Error Searching for gRNAs ...
crisprseek
updated 9.7 years ago by ★ 4.3k • written 9.7 years ago by • 0
1
vote
3
replies
2.3k
views
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 10
1
vote
4
replies
2.0k
views
ChIPQC error: Error in generating sample data
ChIPQC
updated 9.7 years ago by ★ 5.2k • written 9.7 years ago by ▴ 30
0
votes
4
replies
1.7k
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mapToGenome minfi package
minfi
updated 9.7 years ago by ★ 6.5k • written 9.7 years ago by ▴ 290
0
votes
2
replies
1.5k
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Methylation and gene expression data
methylation geneexpression
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ▴ 290
1
vote
4
replies
1.3k
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design matrix for a 2 groups
limma
updated 9.7 years ago by ▴ 420 • written 9.7 years ago by • 0
3
votes
1
reply
1.7k
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window counts in csaw
csaw counts
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
5
votes
5
replies
3.4k
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Is this the correct way of doing a paired t-test in limma using contrasts
limma
9.7 years ago chris86 ▴ 420
1
vote
2
replies
1.4k
views
What are the expression value of genes/probes in limma results of topTable
Heatmap
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
1
vote
2
replies
1.5k
views
rsbml load error on Mac
R sbml rsbml mac os x
9.7 years ago resuper ▴ 10
0
votes
3
replies
2.1k
views
lumi package impossible to install - xtable library
lumi xtable
9.7 years ago fournier.berlin • 0
1
vote
1
reply
1.7k
views
minfi starting from beta values
minfi
9.7 years ago Asma rabe ▴ 290
0
votes
0
replies
1.1k
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Error in TSCAN
TSCAN
9.7 years ago xuyang_dami • 0
2
votes
6
replies
2.7k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
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updated 9.7 years ago by ▴ 270 • written 9.7 years ago by • 0
0
votes
2
replies
4.1k
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Get the reactions for a organism using KEGGREST
keggrest
9.7 years ago kjboteroo • 0
0
votes
2
replies
1.6k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite biocupgrade
updated 9.7 years ago by 25k • written 9.7 years ago by • 0
1
vote
4
replies
1.9k
views
Issues installing GenomicAlignments
genomicalignments
9.7 years ago Radhouane Aniba ▴ 240
0
votes
1
reply
1.0k
views
tRanslatome package plots
tRanslatome
updated 9.7 years ago by • 0 • written 9.7 years ago by • 0
0
votes
1
reply
1.5k
views
Pull request for customProDB package
customProDB featurerequest
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by ▴ 10
1
vote
4
replies
2.0k
views
DESeq2 , model matrix with 4 factors, error: inv(): matrix appears to be singular
deseq2 multiple factor design model.matrix
updated 9.7 years ago by 43k • written 9.7 years ago by • 0
0
votes
1
reply
2.4k
views
Error in ChIPQC: "Error in if (res >= minval) { : missing value where TRUE/FALSE needed"
chipqc
updated 9.7 years ago by ★ 5.2k • written 9.9 years ago by ▴ 140
0
votes
1
reply
1.4k
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Error in makeOrganismDbFromBiomart call for Heliconius melpomene (Ensembl Metazoa)
OrganismDbi
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 90
0
votes
2
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plotZScores error in FourCSeq
fourCseq
9.7 years ago snowhune • 0
5
votes
10
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Interpretation of results for treat & topTreat functions from limma regarding microarray abalysis
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updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 840
0
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0
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News: Workshop: Clinical Bioinformatics as a Service, at ECCB 2016 - register till 29 May
workshop News
9.8 years ago • updated 9.7 years ago Wolfgang Huber ★ 13k
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How is the mean-variance plot calculated?
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updated 9.7 years ago by ★ 13k • written 9.7 years ago by • 0
1
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3
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How to resolve length bias and get GO/KEGG pathway for "non-standard" species in limma or goseq ?
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updated 9.7 years ago by ▴ 320 • written 9.7 years ago by ▴ 40
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1.1k
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[bug] build problem: compiler is
DESeq2
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by • 0
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3
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UcscTrack scan() error
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updated 9.7 years ago by ★ 1.6k • written 9.7 years ago by ▴ 10
3
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3
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Gviz: Should the add53 parameter react to reverseStrand = TRUE ?
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updated 9.7 years ago by ★ 1.6k • written 9.9 years ago by ▴ 90
3
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10
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Shifted dashed frame in Gviz boxplot
gviz boxplot
updated 9.7 years ago by ★ 1.6k • written 9.7 years ago by ▴ 680
2
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Obsolete use of AC_INIT macro
rtracklayer
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 180
3
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Job: PhD Positions in Computational Cancer Research
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9.7 years ago Bernd Fischer ▴ 550
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Epivisr namespace error
epivizr
updated 9.7 years ago by ▴ 60 • written 9.7 years ago by ▴ 20
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shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 9.7 years ago by ▴ 420 • written 9.9 years ago by ▴ 140
0
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1
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ChipQC report tables
ChIPQ
updated 9.7 years ago by ▴ 420 • written 9.8 years ago by ▴ 20
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biomaRt changed host issues
biomart
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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GOseq tutorial for not supported organisms: am I doing it correctly?
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9.7 years ago CandiceChuDVM ▴ 40
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