0
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0
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104
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DMRcate error need at least two non-NA values to interpolate
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6 weeks ago Macsue • 0
1
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2
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365
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CombineArrays for EPIC and EPIC V2
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6 weeks ago • updated 13 days ago Kim • 0
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6
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456
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DESeq2 step-by-step Normalization then DGE separately & Normalization methods and switchability
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updated 6 weeks ago by 42k • written 6 weeks ago by • 0
1
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4
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461
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Using a change in a continuous explanatory variable to test changes in gene expression with limma
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updated 6 weeks ago by 50k • written 6 weeks ago by • 0
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2
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195
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edgeR analysis: glm functions and offset matrix
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6 weeks ago Marianna ▴ 20
0
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2
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207
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voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
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6
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362
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unable to access Annotationhub latest record
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10
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471
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Obtaining pheno data from CEL files
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6 weeks ago • updated 5 weeks ago Kurtis • 0
1
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1
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172
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DESeq2 , filter and theta arguments in resutlts()
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6 weeks ago Layal • 0
0
votes
2
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183
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pca with VST of DESeq2 give 100% variance in PC1
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6 weeks ago michelafrancesconi8 • 0
0
votes
1
reply
162
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 6 weeks ago by 65k • written 6 weeks ago by • 0
0
votes
4
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284
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Abnormal Low Dispersion Gene Population in DESeq2
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updated 6 weeks ago by 42k • written 6 weeks ago by • 0
0
votes
1
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121
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Brachypodium distachyon db
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updated 6 weeks ago by 65k • written 6 weeks ago by • 0
0
votes
4
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447
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Adjust RNA-seq counts (more than one batch variable) for plotting differentially expressed genes
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6 weeks ago Lucy ▴ 60
0
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2
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195
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How to make GSEAplot with chip set
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6 weeks ago Seongsu • 0
0
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1
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173
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No output from read.bismark with bismark cov.files
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updated 6 weeks ago by 65k • written 6 weeks ago by • 0
0
votes
2
replies
189
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Gene Ontology doubt
microbiomeExplorer
6 weeks ago Bhawna • 0
0
votes
2
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314
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Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
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6 weeks ago • updated 5 weeks ago fer_talavera • 0
1
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2
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256
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MethylKit read issue
methylKit
updated 5 weeks ago by 65k • written 6 weeks ago by • 0
0
votes
2
replies
279
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Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
6 weeks ago • updated 27 days ago isaac.vock • 0
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votes
7
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434
views
Internet connection for Bioconductor packages in Rstudio in Iran...
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6 weeks ago needNGS • 0
0
votes
1
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190
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Convert transcriptomic bam to genomic bam?
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updated 6 weeks ago by 42k • written 6 weeks ago by ▴ 10
15
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23
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2.0k
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The difference when using Limma compare between 3 conditions vs 2 conditions
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6 weeks ago • updated 16 days ago Chris ▴ 10
0
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4
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262
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Minfi - estimatecellscount
min minfi
updated 17 days ago by 65k • written 6 weeks ago by • 0
0
votes
0
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123
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How to extract the coordinate of dba.plotPCA?
DiffBind PCA
6 weeks ago feather-W • 0
0
votes
0
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120
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PCA plot for normalized counts using Diffbind
DiffBind PCAplot
6 weeks ago Ankit ▴ 20
1
vote
5
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363
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fgsea fork
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updated 6 weeks ago by 65k • written 7 weeks ago by • 0
3
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5
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411
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Differing results from plotMDS and PCAtools
edgeR PCAtools
updated 6 weeks ago by 50k • written 7 weeks ago by • 0
0
votes
6
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370
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Doing comparison of RNA-seq data using EdgeR
metaMSdata edgeR
updated 6 weeks ago by 50k • written 7 weeks ago by • 0
0
votes
1
reply
175
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New genes that did not exist in dds object suddenly showed up after degPatterns
DESeq2
updated 7 weeks ago by 42k • written 7 weeks ago by • 0
0
votes
2
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238
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WGCNA: analysis of complex trait associations with regressions
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7 weeks ago • updated 6 weeks ago w.cookson • 0
0
votes
0
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109
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DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
7 weeks ago Pierre Lindenbaum ▴ 10
0
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1
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150
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Trimming a section of a scaffold from a genome
Biostrings GenomeAssembly
updated 7 weeks ago by 65k • written 7 weeks ago by • 0
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3
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373
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PCA of different bacterial species
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updated 7 weeks ago by 42k • written 7 weeks ago by ▴ 10
2
votes
8
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559
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Microarray Limma Model fitting and DEG
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updated 7 weeks ago by 50k • written 7 weeks ago by • 0
1
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2
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237
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Problem with maplot {affy} method when using rma {affy} method output as its input
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7 weeks ago Mj.A. • 0
0
votes
2
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215
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Clarification on Library Size Normalization After Using tximport with countsFromAbundance="lengthScaledTPM"
tximport
updated 7 weeks ago by 42k • written 7 weeks ago by • 0
2
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2
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254
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From a DNAStringSet to a data.frame
Biostrings
7 weeks ago ramiro.barrantes ▴ 10
5
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25
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985
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limma models out of memory issue on Slurm HPC
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updated 6 weeks ago by 50k • written 7 weeks ago by ▴ 10
0
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2
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188
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bioconductor emailing list
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updated 7 weeks ago by 3.9k • written 7 weeks ago by • 0
2
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3
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269
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Rsubread crashes Rstudio while alignment
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updated 7 weeks ago by ★ 3.6k • written 7 weeks ago by • 0
3
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2
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233
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How to extract counts from a DESeq dataset ordered by a specific sample?
DESeq2 Transcriptomics
7 weeks ago Anita ▴ 10
0
votes
0
replies
138
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Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals GenomicRanges
7 weeks ago gshweta95 • 0
2
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1
reply
252
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Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran bluster scater scuttle
updated 7 weeks ago by ★ 4.1k • written 7 weeks ago by ★ 1.5k
3
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450
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Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
scater runPCA
updated 7 weeks ago by ▴ 160 • written 7 weeks ago by • 0
7
votes
6
replies
479
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Batch Effect Correction, Gene Filtering
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updated 7 weeks ago by 50k • written 7 weeks ago by • 0
0
votes
2
replies
368
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The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
7 weeks ago • updated 6 weeks ago Gordon • 0
2
votes
1
reply
229
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Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
updated 7 weeks ago by ★ 4.0k • written 7 weeks ago by ▴ 10
0
votes
0
replies
163
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
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7 weeks ago Maria Doyle ▴ 70
1
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0
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45,664 results • Page 5 of 914
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
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Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
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