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Help with the code for "BiocNeighbors::generic_find_knn() function used by scran::quickCluster()
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2 days ago • updated 1 day ago Arctic • 0
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Comment: single-cells RNA-seq analysis by MAST with unbalanced group size by achoppe ▴ 10
Hello! I also have compared uneven groups of cells - 517 cells in one group and 26 in the other. I am wondering if you know any published …
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Thanks, I figured it out.
Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0
I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…
Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
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A: single-cells RNA-seq analysis by MAST with unbalanced group size
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Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
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