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88
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DiffBind: no peaks in DBA object
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13 days ago yvonneh • 0
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13 days ago Ian D. ▴ 70
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1
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124
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Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
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written 13 days ago by • 0
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2
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Deseq2 and Normalization of RNA sequencing data
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13 days ago • updated 12 days ago kcarey • 0
0
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3
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204
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updated 13 days ago by ★ 4.1k • written 13 days ago by • 0
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14 days ago • updated 12 days ago Chris ▴ 10
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4
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updated 3 days ago by • 0 • written 14 days ago by ▴ 70
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2
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279
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Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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14 days ago • updated 13 days ago Yveto • 0
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3
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297
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updated 13 days ago by 42k • written 14 days ago by • 0
3
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4
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256
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15 days ago Chris ▴ 10
1
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1
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147
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Fold change calculation in Diffbind vs. DESEQ2?
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updated 15 days ago by 42k • written 15 days ago by • 0
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91
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15 days ago • updated 12 days ago Aurora • 0
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117
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updated 15 days ago by 3.9k • written 15 days ago by • 0
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259
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How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
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updated 15 days ago by 65k • written 15 days ago by • 0
0
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1
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135
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Padj "NA" with thousands of low count although the raw read counts are quite large
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updated 15 days ago by 42k • written 16 days ago by • 0
2
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2
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227
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Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
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16 days ago Chris ▴ 10
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90
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Could we detect difference at pathway level but not significant different at gene level?
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16 days ago Chris ▴ 10
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3
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269
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Assist me in determining whether the analysis process using the limma package has been executed correctly.
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updated 15 days ago by 65k • written 16 days ago by • 0
3
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3
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259
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DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
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updated 16 days ago by ★ 4.1k • written 16 days ago by ▴ 10
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148
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Dominance Index for Shotgun Metagenomics Data
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updated 18 days ago by ▴ 40 • written 19 days ago by ★ 1.5k
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3
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248
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Deseq2. decontXcounts not integers. Useful alternative?
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updated 19 days ago by 42k • written 20 days ago by • 0
1
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7
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346
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Math expression in shapeCustom legend in EnhancedVolcano
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20 days ago • updated 19 days ago pl23 • 0
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9
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updated 20 days ago by 65k • written 20 days ago by • 0
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0
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One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
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20 days ago • updated 12 days ago glaciya2018 • 0
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updated 19 days ago by 42k • written 20 days ago by • 0
0
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1
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164
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DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
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updated 21 days ago by 42k • written 21 days ago by • 0
0
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164
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ATACseq merge peaks
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updated 19 days ago by ★ 4.1k • written 21 days ago by • 0
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21 days ago • updated 16 days ago Sara • 0
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21 days ago Dario Strbenac ★ 1.5k
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21 days ago • updated 20 days ago ATpoint ★ 4.1k
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updated 21 days ago by 42k • written 21 days ago by ▴ 20
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4
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Opposite sign of LFC in count plots of DEGs (DESeq2)
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21 days ago • updated 19 days ago winwater0928 • 0
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5
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get BM error
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updated 21 days ago by 65k • written 21 days ago by • 0
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updated 20 days ago by 65k • written 21 days ago by • 0
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Citation for edgeR user guide
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325
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updated 21 days ago by 42k • written 22 days ago by ▴ 40
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128
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DESeq2 output used for PCA plot on R studio
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updated 20 days ago by ★ 1.4k • written 22 days ago by • 0
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22 days ago info ▴ 10
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
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22 days ago • updated 20 days ago shuwangxinze1996 • 0
0
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2
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185
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limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 22 days ago by • 0
3
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3
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245
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DESeq2 - dispersion estimation when there is none
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updated 22 days ago by 42k • written 23 days ago by • 0
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4
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minfi::read.metharray.exp
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updated 21 days ago by ▴ 780 • written 23 days ago by • 0
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2
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23 days ago • updated 9 days ago Lluís Revilla Sancho ▴ 730
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5
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320
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Error for AnnotationForge makeOrgPackageFromNCBI function
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updated 21 days ago by 65k • written 24 days ago by • 0
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
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