Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
1
reply
1.4k
views
SingleR error with multiple references
SingleR
updated 2.6 years ago by
Irish
• 0 • written 3.1 years ago by
carlo
• 0
0
votes
0
replies
741
views
is it possible to limit fgsea to particular tissue type?
fgsea
3.1 years ago
kavator
▴ 30
0
votes
1
reply
1.4k
views
OligoArrayAux fails to compile
DECIPHER
3.1 years ago
fabian.roger08
▴ 10
1
vote
3
replies
2.0k
views
Error using biomaRt
biomaRt
updated 3.1 years ago by
Mike Smith
★ 6.6k • written 3.1 years ago by
arantes_gabriel
▴ 10
0
votes
0
replies
658
views
Conversion of multiple protein fasta sequences into their gene name
GenePrediction
3.1 years ago
AROCKIYA
• 0
0
votes
2
replies
1.9k
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 3.0 years ago by
Christian Mertes
• 0 • written 3.1 years ago by
me.achleitner
• 0
1
vote
1
reply
1.3k
views
SingleR using TPM in a bulk RNA seq dataset
SingleR
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
mea2712
• 0
0
votes
0
replies
630
views
GRaNIE visualizeGRN function bug
GRaNIE
3.1 years ago
Лиза
• 0
0
votes
3
replies
1.9k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 3.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.1 years ago by
i.am.filippov
• 0
0
votes
7
replies
5.7k
views
Mouse GSEA Analysis
clusterProfiler
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
Rob
• 0
0
votes
0
replies
821
views
Trouble installing lpsymphony
lpsymphony
Maaslin2
3.1 years ago
Vic
• 0
0
votes
0
replies
754
views
polyester running question
polyester
3.1 years ago
Seongwoo Han
▴ 10
0
votes
1
reply
1.0k
views
Improving Immgen Annotations
Annotations
3.1 years ago
Adam
• 0
0
votes
1
reply
1.4k
views
Biocparallel Error "Error: BiocParallel errors element index: 1, 2, 3 first error: unable to find an inherited method for function ‘bpbackend’ fo…
R
OUTRIDER
BiocParallel
updated 3.0 years ago by
Christian Mertes
• 0 • written 3.1 years ago by
me.achleitner
• 0
0
votes
0
replies
976
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
3.1 years ago
Dennis.hinkel
• 0
0
votes
0
replies
1.1k
views
how to get protein sequence similarity and gaps % using Biostrings
sequence-similarity
gaps
homology
Biostrings
pairwise-alignment
3.1 years ago
biong
• 0
0
votes
0
replies
1.4k
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
3.1 years ago
Rob
• 0
1
vote
4
replies
2.4k
views
why there are read counts in the gene knock out rat RNA-seq data
ReadCounts
3.1 years ago
Yijing
• 0
0
votes
1
reply
1.1k
views
Error calling GADEM from rGADEM package
rGADEM
updated 2.6 years ago by
mohamedrefaat.1.1992
• 0 • written 3.1 years ago by
Nils.Rother
• 0
0
votes
0
replies
702
views
ConsensusClusterPlus and Scaled Data
ConsensusClusterPlus
3.1 years ago
William
• 0
0
votes
0
replies
1.1k
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
3.1 years ago
Javier
• 0
1
vote
0
replies
995
views
Over Representation Analysis using PFAM/InterPro database
PFAM.db
clusterProfiler
3.1 years ago
alexandr.gopanenko
▴ 50
0
votes
0
replies
860
views
TCGAbiolinks GDCprepare produces error in vectbl_as_col_location()
TCGAbiolinks
3.1 years ago
lescano
▴ 10
0
votes
0
replies
927
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
3.1 years ago
m610110001
• 0
1
vote
0
replies
1.1k
views
Shotgun metagenomics data analysis
Metagenomics
abundance
3.1 years ago
YASIR
▴ 10
0
votes
0
replies
637
views
How does distance in bins calculated? Can it be replaced with distance in bp?
metagene
metagene2
3.1 years ago
sfpacman
• 0
1
vote
1
reply
848
views
DESeq2 results not correct
Mus_musculus_Data
updated 3.1 years ago by
James W. MacDonald
68k • written 3.1 years ago by
Ashish
• 0
0
votes
2
replies
969
views
How to get accession by the name of species
genbank
R
accession
3.1 years ago
wertykus1
• 0
0
votes
0
replies
763
views
Problem loading ChemmineOB
ChemmineOB
updated 3.1 years ago by
shepherl
4.2k • written 3.1 years ago by
juliev
• 0
0
votes
4
replies
1.4k
views
Error installing Bioc
clusterProfiler
Bioconductor
BiocManager
updated 3.1 years ago by
Guido Hooiveld
★ 4.1k • written 3.1 years ago by
Javier
• 0
0
votes
0
replies
860
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto
FlowCytometry
3.1 years ago
Noël
• 0
2
votes
4
replies
1.9k
views
Advice on ANCOMBC 'R CMD build' error for BioC 3.16
BuildReport
updated 3.2 years ago by
shepherl
4.2k • written 3.2 years ago by
HULFRED
▴ 10
0
votes
4
replies
3.2k
views
How to sort SAM file
samtool
updated 3.2 years ago by
swbarnes2
★ 1.4k • written 3.2 years ago by
Maryam.sed1400
• 0
0
votes
0
replies
895
views
Mapping transcript to genomic positions via GenomicFeatures is not splice aware
GenomicFeatures
3.2 years ago
nattzy94
▴ 20
0
votes
2
replies
1.2k
views
Shivani
kegg
updated 3.2 years ago by
deeenes
▴ 60 • written 3.2 years ago by
Shivani
• 0
0
votes
2
replies
1.2k
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3.2 years ago
michela
▴ 20
0
votes
0
replies
990
views
Correct GFF3 translation for FeatureCounts
RNASeq
FeatureCounts
Rna
3.2 years ago
rridley3
• 0
0
votes
3
replies
1.3k
views
I have a problem when I run DESeq2 with one variable with 8 levels, I can't find the contrast for any comparison with level 8
Contrast
factors
levels
3.2 years ago • updated 3.1 years ago
Edgar
• 0
0
votes
1
reply
1.3k
views
Error installing package msa on macOS Monterey 12.6 arm64
msa
arm64
3.2 years ago • updated 3.1 years ago
lisa.a.ouellette
• 0
1
vote
1
reply
3.4k
views
installation of BioC packages on Mac M1 Monterrey OS
limma
Bioconductor
edgeR
3.2 years ago
Bogdan
▴ 670
0
votes
0
replies
1.5k
views
gseDo function issue
Biocpa
BiocParallel
3.2 years ago
meetdpanjwani1990
• 0
0
votes
1
reply
1.4k
views
DiffBind question _ SampleSheet / Venn diagram issue
chipseq
DiffBind
updated 3.2 years ago by
Rory Stark
★ 5.2k • written 3.2 years ago by
Nicole
• 0
0
votes
0
replies
950
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
3.2 years ago
Bastian
• 0
0
votes
1
reply
2.4k
views
How to interpret MAST coefficients
DifferentialExpression
MAST
updated 6 months ago by
Chenghao
▴ 10 • written 3.2 years ago by
Ismail
• 0
1
vote
2
replies
2.1k
views
What number components should I use if I want to show 2D and 3D UMAP
scater
UAMP
scRNAseq
3.2 years ago
Guandong Shang
▴ 40
0
votes
3
replies
5.7k
views
ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 2.2 years ago by
andresrabinovich
• 0 • written 3.2 years ago by
thithusuong.nguyen
• 0
0
votes
2
replies
1.3k
views
multiple correction on mean of TPM
TPM
3.2 years ago
Harish.Sudarsanam
• 0
0
votes
1
reply
1.1k
views
Share Annotation Packages
OrgDb
AnnotationDbi
updated 3.2 years ago by
shepherl
4.2k • written 3.2 years ago by
Imad
• 0
0
votes
1
reply
1.4k
views
How to subset a list of genes from a curated reference list of genes
R
subset
DifferentialExpression
updated 3.2 years ago by
Basti
▴ 780 • written 3.2 years ago by
Manav
• 0
0
votes
0
replies
779
views
Problem with ORA in CEMiTool
GeneRegulation
3.2 years ago
j.a.craft
• 0
1,000 results • Page
17 of 20
Recent ...
Replies
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.6k
Scholar
to
Nikos Ignatiadis
▴ 180
Popular Question
to
Robert
• 0
Popular Question
to
lamia11me
• 0
Popular Question
to
Gordon Smyth
53k
Locations
• All
USA,
29 minutes ago
The city by the bay,
47 minutes ago
United States,
2 hours ago
United States,
2 hours ago
United States,
3 hours ago
Traffic: 1326 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6