0
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0
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737
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dont find xcmsSet for peak analysis
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3.2 years ago aline.lafise • 0
1
vote
0
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911
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Possible to customize the parallel computation used in readGAlignments?
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3.2 years ago chen_ying ▴ 10
0
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0
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Gene co-expression network analysis with small sample size
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3.2 years ago Senthil • 0
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Edit alignment in msa
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3.2 years ago Luis • 0
0
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1
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1.2k
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' Update all/some/none? [a/s/n]: '
forensic expt
updated 3.2 years ago by • 0 • written 3.2 years ago by • 0
0
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3
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1.8k
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scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy scRNAseq fastmnn r
3.2 years ago Madiha • 0
0
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1
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1.1k
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 3.2 years ago by ▴ 780 • written 3.2 years ago by • 0
0
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0
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696
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GenVisR - adding on genomic positions to CovGen graph
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3.2 years ago Amy_ • 0
0
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0
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863
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Gene Ontology on Streptococcus Pneumoniae genes sets
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3.2 years ago BioinFo.X • 0
0
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0
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547
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H bond prediction of two sequences
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3.2 years ago Marcus • 0
1
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0
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
3.2 years ago Kevin Gregory ▴ 10
0
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1
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2.7k
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Treeplot by enrichplot
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updated 3.2 years ago by ★ 1.2k • written 3.2 years ago by • 0
0
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0
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question on the p value for VIPER results by dorothea
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3.2 years ago snowmattin • 0
0
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0
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Outliers
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updated 3.2 years ago by ★ 5.0k • written 3.2 years ago by • 0
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0
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HISAT2 and HTSEQ command
HTSeqGenie
3.2 years ago Maryam.sed1400 • 0
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0
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WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
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3.2 years ago Julieta • 0
2
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1
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.3 years ago by ▴ 50 • written 3.3 years ago by ▴ 10
0
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0
replies
906
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weighting sample group
monocle SingleCell DifferentialExpression
3.3 years ago Sogand • 0
0
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0
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Simplify - clusterProfiler
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3.3 years ago estafana.t98 • 0
0
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2
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Error message from protein coding prediction with VariantAnnotation
R VariantAnnotation
3.3 years ago rwan.work • 0
1
vote
1
reply
1.3k
views
Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by ▴ 30
0
votes
0
replies
606
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Identification of tissue-specific exons using DEXSeq
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3.3 years ago osieman52 • 0
0
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0
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760
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how to create PHENO_DATA
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3.3 years ago marymshahi2021 • 0
0
votes
2
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Error when using tallyVariants with parallel jobs not returning results
VariantTools
updated 3.3 years ago by 6.7k • written 3.3 years ago by • 0
1
vote
0
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891
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Data format format for summarising each NGS read without collapsing into a count
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3.3 years ago Rick ▴ 10
0
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1
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[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 3.3 years ago by 4.2k • written 3.3 years ago by • 0
1
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1
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issue with biomaRt ENSEMBL_MART_SNP
biomaRt
updated 3.3 years ago by ★ 6.6k • written 3.3 years ago by ▴ 10
0
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0
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DEXSeq: mcols(dxd)$fullBetaConv either contains TRUE or NA
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3.3 years ago Matthias Munz ▴ 20
0
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0
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GO-terms Semantic Similarity Measures: How to decide which method(s) to use?
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3.3 years ago Andrew • 0
0
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0
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Finding DEGs between two different datasets using limma
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3.3 years ago mfaleevs • 0
0
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2
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3.3 years ago KMS ▴ 20
0
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5
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How to add a BioConductor package to a Docker image based on rocker/shiny
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3.3 years ago Sam ▴ 10
1
vote
3
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read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- TRUE : wrong args for environment subassignment
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0
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Query on TCGA
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3.3 years ago hemangininaik09 • 0
0
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0
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3.3 years ago merv ▴ 150
1
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4
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1.5k
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Error of PWM not colsum to 1 from package DiffLogo or seqLogo
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3.3 years ago zhxiaokang ▴ 20
0
votes
1
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1.1k
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getBM Error with certain attribute combinations
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updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by • 0
0
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0
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
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3.3 years ago Manav • 0
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0
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3.3 years ago JAcky • 0
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0
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maSigPro visualizing individually each plot from each cluster
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3.3 years ago oseias.rf.junior • 0
1
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1
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Unable to install "scruff" with BiocManager::install()
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updated 3.3 years ago by 4.2k • written 3.3 years ago by • 0
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2
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long computing time for TSS enrichment score
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updated 2.3 years ago by • 0 • written 3.3 years ago by • 0
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1
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WGCNA - Network construction and module detection
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updated 3.3 years ago by ▴ 50 • written 3.3 years ago by ▴ 20
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getSRAdbFile() does not work
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3.3 years ago jfertaj ▴ 30
0
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1
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
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updated 3.3 years ago by ▴ 290 • written 3.3 years ago by • 0
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Cluster profiler - adj p-value differ from Enrichr
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3.3 years ago angkoo ▴ 10
4
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6
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HTSeq command option for single-end reads
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0
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How does MAST caculate log fc
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3.3 years ago • updated 6 months ago Chenghao ▴ 10
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using of z score in Differentially Expression Analysis
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updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by • 0
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997
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Interpret MetaVolcanoR plot
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updated 3.3 years ago by ★ 4.0k • written 3.3 years ago by • 0
1,000 results • Page 18 of 20
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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