Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
818
views
biomaRt, Ensembl, adding new "phenotype_source"
biomaRt
3.5 years ago
Hector
• 0
0
votes
0
replies
943
views
Plotting a line plot for genes across 4-species
RNAseq123
3.5 years ago
Mohamed
▴ 30
0
votes
3
replies
1.9k
views
cn.mops segmentation error
cn.mops
updated 3.5 years ago by
gpovysil
• 0 • written 3.5 years ago by
jacorvar
▴ 40
0
votes
0
replies
894
views
Negative Q2Y
Metabolomics
3.5 years ago
Eddie
• 0
0
votes
0
replies
1.0k
views
MetaVolcanoR usage
limma
MetaVolcanoR
EnhancedVolcano
3.5 years ago
JAcky
• 0
0
votes
0
replies
830
views
Filtering references to a taxa
brendaDb
3.5 years ago
Lluís Revilla Sancho
▴ 760
0
votes
0
replies
1.1k
views
Plot of variable importance
Metabolomics
3.6 years ago
Eddie
• 0
0
votes
0
replies
671
views
gscreend: Multiple T0 replicates
gscreend
3.6 years ago
pk_labrador
• 0
0
votes
0
replies
1.3k
views
intron coordination and annotation
ChIPSeq
updated 3.6 years ago by
ATpoint
★ 5.0k • written 3.6 years ago by
mehdi
• 0
0
votes
1
reply
1.8k
views
WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 3.6 years ago by
Cannabis Equipment Financing
• 0 • written 3.6 years ago by
803ebee7
• 0
0
votes
0
replies
1.1k
views
CytoML: gatingset_to_flowjo() "Could not find files for the given pattern(s)" error
CytoML
3.6 years ago
nmchavez
• 0
0
votes
1
reply
1.1k
views
how to identify the unwanted variables independent of phenotypes
RUVSeq
svaseq
3.6 years ago
Tongjun
• 0
1
vote
0
replies
1.1k
views
Why does surrogate variable confound with variable given in mod?
sva
3.6 years ago
shdam
▴ 10
1
vote
0
replies
1.0k
views
Error while running Case study n. 3: Integration of methylation and expression for ACC
geneexpression
methylation
3.6 years ago
hlee
▴ 10
0
votes
1
reply
1.3k
views
DiffBind: dba.plotPCA() ellipse
PrincipalComponent
DiffBind
updated 3.6 years ago by
swbarnes2
★ 1.4k • written 3.6 years ago by
Lisa
• 0
0
votes
0
replies
725
views
how to obtain the download number of a bioconductor package
badges
3.6 years ago
zhilongjia
• 0
0
votes
0
replies
1.1k
views
ARACNe Sample Size
grndata
GRN
ARACNE
WGCNA
3.6 years ago
Harrsha
• 0
0
votes
0
replies
1.7k
views
how to calculate similarity between each cluster in scRNA and bulk RNA-seq
SingleR
scRNAseq
3.6 years ago
Guandong Shang
▴ 40
0
votes
0
replies
1.3k
views
Cannot Install genefilter
genefilter
3.6 years ago
Francis
• 0
1
vote
0
replies
978
views
Which algorithm would you use for the cell-cell communication analysis of bulk RNA seq datasets?
RNASeq
3.6 years ago
curiousmind007
▴ 10
2
votes
5
replies
3.1k
views
proteomics analysis
Proteomics
analysis
updated 3.6 years ago by
jeroen.gilis
▴ 100 • written 3.6 years ago by
Shakiba
• 0
0
votes
0
replies
1.1k
views
biomaRt has encountered an unknown server error
biomaRt
3.6 years ago
Grace_H
• 0
0
votes
0
replies
881
views
Enrichment in genomic regions
Enrichment
clusterPro
WGCNA
3.6 years ago
María José
• 0
0
votes
0
replies
1.2k
views
How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
biomaRt
customProDB
3.6 years ago
04.marshal-decibel
• 0
0
votes
0
replies
656
views
regulondb version fixed to 10.8?
regutools
3.6 years ago
a.giachino2
• 0
0
votes
3
replies
7.0k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler
enrichplot
clusterpro
doseR
dose
updated 3.6 years ago by
Guido Hooiveld
★ 4.1k • written 3.6 years ago by
rama
▴ 10
0
votes
0
replies
1.1k
views
How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference
SampledBlockWiseModules
WGCNA
3.6 years ago
as8020
• 0
0
votes
1
reply
1.3k
views
fetaure counts err
featurecounts
updated 3.5 years ago by
Wei Shi
★ 3.6k • written 3.6 years ago by
哲
• 0
0
votes
0
replies
1.2k
views
ACMG Annotations for Variants in R
ACMG
SNP
3.6 years ago
hamza_karakurt
▴ 60
1
vote
6
replies
2.0k
views
Error while running DESeq2
DifferentialExpression
3.6 years ago
srikar
• 0
1
vote
0
replies
1.0k
views
Mapping patient dataset onto control dataset
Cytometry
R
Data
3.6 years ago
hamiltond
▴ 10
0
votes
4
replies
1.7k
views
rename phenotypic variables in pData (microarray) or colData (RNA-Seq)
PhenoGeneRanker
3.6 years ago
jogugil
• 0
0
votes
0
replies
969
views
nearest and nearestKNeighbors with k=1 produce different results
GenomicRanges
3.6 years ago
Simon Coetzee
▴ 50
0
votes
0
replies
821
views
coseq does not find object "cap"
coseq
3.6 years ago
JaneDoe
• 0
0
votes
1
reply
5.2k
views
Pick some clusters to run trajectory and pseudotime analysis on Monocle3
SpecificClusters
TrajectoryAnalysis
PseudotimeAnalysis
Monocle3
updated 2.9 years ago by
mzh
• 0 • written 3.6 years ago by
martacrespi7
▴ 10
0
votes
0
replies
1.3k
views
Calculating tumour purity having only CNA data
PureCN
CNA
purity
cancer
3.6 years ago
JAcky
• 0
0
votes
2
replies
1.0k
views
bootstrapNullAlternativeModel() returns error
TPP2D
3.6 years ago
Tobias
▴ 40
0
votes
1
reply
1.9k
views
During dba(sampleSheet = "samples.csv") step, Error in mergeScores(merged, def, peakset, TRUE) : Not compatible with requested type: [type=charac…
DiffBind
updated 3.6 years ago by
Rory Stark
★ 5.2k • written 3.6 years ago by
niimabear
• 0
0
votes
0
replies
1.1k
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
3.6 years ago
ZheFrench
▴ 60
0
votes
1
reply
1.6k
views
Use of Scater for QC in scRNA-seq: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
updated 3.6 years ago by
ATpoint
★ 5.0k • written 3.6 years ago by
otieno43
• 0
0
votes
0
replies
1.5k
views
Problem with "TxDb.Mmusculus.UCSC.mm39.refGene" to annotate genes with ChIPseeker
TxDb.Mmusculus.UCSC.mm39.refGene
ChIPseeker
annotate
3.6 years ago
Palmira
• 0
0
votes
0
replies
826
views
Timeout error when querying DGIDB
rDGIdb
3.6 years ago
Jannah
• 0
0
votes
0
replies
1.2k
views
Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow
DifferentialExpression
SingleCell
SingleCellMultiModal
MAST
3.6 years ago
Nik Tuzov
▴ 90
0
votes
1
reply
1.6k
views
DiffBind: GreyListChIP error: Error: $ operator is invalid for atomic vectors
DiffBind
updated 3.6 years ago by
Rory Stark
★ 5.2k • written 3.6 years ago by
millerh1
▴ 10
0
votes
0
replies
774
views
Is there a Bioconductor package to calculate TFs regulatory networks?
TFs
Transcription
regulator
3.6 years ago
OliverBoynton
• 0
0
votes
0
replies
885
views
Typo in citation for RNASeqPower
RNASeqPower
citation
3.6 years ago
stephenjjohnson
• 0
0
votes
0
replies
652
views
diffbind dba.report
diffbind
3.6 years ago
jonathanho1989
• 0
1
vote
4
replies
2.2k
views
How to create an aldex.clr object from a "selex" data table
ALDEx2
3.6 years ago
Greg
• 0
0
votes
2
replies
904
views
Error in NxtIRFcore
NxtIRFcore
IRFinder
3.6 years ago
ieki.tky
• 0
1
vote
5
replies
2.4k
views
Unable to load mm10 genome for use with GenomicDistributions package
GenomeInfoDb
GenomeInfoDbData
GenomicDistributionsData
GenomicDistributions
3.6 years ago
rashford
• 0
1,000 results • Page
20 of 20
Recent ...
Replies
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
Awards
• All
Teacher
to
Michael Love
43k
Supporter
to
fl
▴ 20
Popular Question
to
James W. MacDonald
68k
Popular Question
to
rcavalca
▴ 140
Popular Question
to
James Aiden
• 0
Locations
• All
United States,
37 minutes ago
Barcelona, Spain,
56 minutes ago
United States,
1 hour ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 1169 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6