0
votes
0
replies
183
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag SplicedAlignment SGSeq minimap2
11 weeks ago jk • 0
0
votes
0
replies
167
views
Can I combine collinear variables into a single value
BatchEffect limma
11 weeks ago Harrsha • 0
0
votes
0
replies
261
views
Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
11 weeks ago vipul14 • 0
0
votes
0
replies
128
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
11 weeks ago danalvoronov ▴ 10
0
votes
0
replies
153
views
lfcSE
RGSEA
11 weeks ago Gordon • 0
0
votes
4
replies
327
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
11 weeks ago mperalc • 0
1
vote
0
replies
189
views
Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data
11 weeks ago BioinfoMug • 0
0
votes
0
replies
173
views
Unclear exon-exon connection after RSubjunc() usage
IGV Rsubjunc Rsubread
11 weeks ago thomas.heigl.ibk • 0
0
votes
1
reply
267
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 11 weeks ago by ★ 4.1k • written 12 weeks ago by • 0
0
votes
6
replies
793
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 9 weeks ago by • 0 • written 12 weeks ago by • 0
0
votes
2
replies
341
views
problem in installing the new version of bioconductor
ANCOMBC
updated 12 weeks ago by 3.9k • written 12 weeks ago by • 0
0
votes
0
replies
180
views
Comparing the effects of a condition over time in two seperate tissues
MAST
12 weeks ago Dillon • 0
0
votes
4
replies
416
views
Installation problem of rtracklayer on Bioconductor version 3.19
newpackage rtracklayer
updated 12 weeks ago by 3.9k • written 12 weeks ago by • 0
0
votes
3
replies
271
views
problems updating package
TrajectoryGeometry
12 weeks ago michael.shapiro • 0
0
votes
0
replies
231
views
how to solve this error?
ChAMPdata ChAMP
3 months ago Meghana • 0
1
vote
1
reply
271
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 7 weeks ago by ▴ 350 • written 3 months ago by ▴ 30
0
votes
0
replies
184
views
flowAI: flow rare check in R vs FlowJo
flowAI
3 months ago Olena • 0
0
votes
0
replies
211
views
ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
3 months ago mat149 ▴ 70
0
votes
0
replies
180
views
GDC slides download
TCGAbiolinks
3 months ago jain72744 • 0
0
votes
0
replies
242
views
Differential expression analysis between different species
DEG RNASeqData DifferentialExpression SCBN RNASeq
3 months ago Abril • 0
0
votes
4
replies
320
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks Survival
updated 3 months ago by ▴ 730 • written 3 months ago by • 0
0
votes
1
reply
240
views
"Counts" in enrichGO
GSEABase
updated 3 months ago by ▴ 10 • written 3 months ago by • 0
0
votes
1
reply
318
views
WGCNA | plotDendroAndColors ERROR
plotDendroAndColor WGCNA
updated 3 months ago by ★ 4.1k • written 3 months ago by • 0
2
votes
15
replies
733
views
Problems with enrichGO
clusterProfiler enrichGO
updated 3 months ago by 42k • written 3 months ago by • 0
0
votes
0
replies
197
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
3 months ago nilanjanamani88 • 0
1
vote
1
reply
248
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
0
votes
3
replies
460
views
Unable to install clusterProfiler
clusterProfiler
updated 3 months ago by • 0 • written 3 months ago by • 0
0
votes
0
replies
170
views
rain: Error in peakl[[x]] : subscript out of bounds
rain
3 months ago mata • 0
1
vote
5
replies
485
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
0
votes
0
replies
192
views
Recount3 error downloading data
recount3 recount
3 months ago Max Bone • 0
0
votes
0
replies
144
views
addcrispraiscores - crisprverse not working
crisprDesign
3 months ago jimjacob08 • 0
0
votes
0
replies
145
views
Error reading bam files with getCounts after updating R
chromVAR chrom
updated 3 months ago by 65k • written 3 months ago by • 0
0
votes
1
reply
193
views
Sample-specific methylation values using QSEA
DNAMethylation cfMeDIP-seq cfDNA qsea
updated 9 weeks ago by • 0 • written 3 months ago by • 0
1
vote
4
replies
508
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
3 months ago mikat • 0
0
votes
0
replies
147
views
What is the significance of DMR in DMRcate
DMRcate
3 months ago chuanjiao6 • 0
0
votes
0
replies
128
views
HiCDCPlus differential interaction error
HiCDCPlus
3 months ago Irene • 0
0
votes
0
replies
173
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
3 months ago Thalita • 0
1
vote
1
reply
413
views
RSubread cellCounts - memory mapping error with NovoSeq but not NextSeq output
Rsubread
updated 10 weeks ago by ▴ 380 • written 3 months ago by ▴ 10
0
votes
0
replies
154
views
Postdoc
TCGAWorkflow
3 months ago sameerahmadguru • 0
2
votes
6
replies
1.1k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
3 months ago Tobias • 0
1
vote
1
reply
268
views
plotUMAP and ggplotly Cell IDs Display
scater
updated 3 months ago by ▴ 160 • written 3 months ago by ★ 1.5k
0
votes
0
replies
187
views
Annotatr Duplicate Entries
annotatr AnnotationHub
3 months ago hayleyw • 0
0
votes
0
replies
143
views
IlluminaHumanMethylation27kanno.ilmn12.hg19 package is mapped to hg18 genome
IlluminaHumanMethylation27kanno.ilmn12.hg19
3 months ago Basti ▴ 780
0
votes
0
replies
157
views
iSEE Difference Panel Missing
iSEEu
3 months ago Dario Strbenac ★ 1.5k
0
votes
1
reply
327
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
3 months ago isaromero8888 • 0
0
votes
1
reply
260
views
Error in GDCRNATools
ceRNA GDCRNATools RNASeq
updated 3 months ago by ▴ 210 • written 3 months ago by • 0
0
votes
1
reply
334
views
WGCNA Soft Power
Normalization DESeq2 Network RNASeqData
updated 3 months ago by ★ 4.1k • written 3 months ago by • 0
0
votes
2
replies
264
views
TCGA-GBM subtype tumor
curatedTCGAData
updated 3 months ago by 700 • written 3 months ago by • 0
0
votes
0
replies
180
views
clusterSweep Warning k Capped
bluster
3 months ago Dario Strbenac ★ 1.5k
0
votes
0
replies
268
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
3 months ago Jawahar • 0
1,000 results • Page 3 of 20
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
Popular Question to euge.eugenio ▴ 20
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Locations • All
Germany, 2 minutes ago
Poland, 11 minutes ago
United States, 14 minutes ago
Germany, 46 minutes ago
United States, 55 minutes ago
Traffic: 354 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6