Showing : Affy • reset
0
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1.4k
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Help for affy
affy process probe
9.7 years ago weizhong_2007 • 0
2
votes
2
replies
9.3k
views
Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R
updated 9.7 years ago by ▴ 760 • written 9.7 years ago by • 0
0
votes
2
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1.6k
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Collation of differentially expressed genes in Limma
affy limma affy limma
updated 9.7 years ago by ★ 2.0k • written 20.1 years ago by ▴ 50
2
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7
replies
2.1k
views
GEO MicroArray Download, Annotation, and Main Probe Filtering
microarray affy biomart
9.7 years ago anthonycolombo60 • 0
0
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2
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4.4k
views
wilcoxon signed rank test for data frame
wilcoxon signed rank test data frame affy
9.7 years ago Smeeta Shrestha ▴ 20
0
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2
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1.5k
views
coefmap plot - label colors
affy coefmap nmf
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
2
votes
4
replies
2.7k
views
arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ▴ 30
2
votes
3
replies
2.9k
views
RAW data in matrix: RMA normalization?
RMA affy raw expression
updated 9.8 years ago by 68k • written 9.8 years ago by ▴ 110
0
votes
2
replies
2.4k
views
CEL to Cibersort mix files, fails find Affymatrix specs
affy cel
9.9 years ago • updated 9.8 years ago thrabe • 0
0
votes
1
reply
1.3k
views
Looking for a package allowing Affymetrix MoGene2.1ST processing
affy xps rma oligo
updated 9.9 years ago by ★ 4.1k • written 9.9 years ago by ▴ 10
0
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8
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2.0k
views
mas5calls error question
mas5 affy mas5 affy mas5 mas5calls affy
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
0
votes
2
replies
1.8k
views
Help with annotating eset (Affy Arrays)
Biobase annotationdbi affy microarray
9.9 years ago rumroses12 • 0
0
votes
1
reply
816
views
xy2indices in Affy package : nr or nc parameter
xy2indices affy
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
5
votes
4
replies
2.1k
views
Is there any tutorial to perform Mouse/Human Transcriptome microarrays 1.0 ?
mta10 tutorial affy
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 40
2
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1
reply
1.9k
views
Error in using library (affy)
affy R bioconductor microarray
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by • 0
0
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5
replies
2.4k
views
MassiR Gender Prediction on Affy microarrays
microarray affy massiR
10.0 years ago t.demooij • 0
3
votes
4
replies
4.4k
views
R Script for selecting differentially expressed genes
limma microarray affy deg
10.1 years ago contato.carlosbau ▴ 10
2
votes
1
reply
1.6k
views
Best way to do quality control and analysis on Exon arrays
Annotation Cancer affy exonmap Annotation Cancer affy exonmap
updated 10.2 years ago by ▴ 10 • written 16.3 years ago by ★ 1.9k
3
votes
6
replies
3.5k
views
WGCNA normalized CDF to use, WGCNA Intramodular connectivity
wgcna affymetrix microarrays affy
updated 10.2 years ago by ★ 3.0k • written 10.4 years ago by ▴ 30
0
votes
1
reply
1.8k
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
10.3 years ago bruce.moran ▴ 30
1
vote
7
replies
3.4k
views
reading a *.txt file of expression values into an AffyBatch
affy normalization rma
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
0
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3
replies
1.3k
views
i need a tab-delimited format
microarray affy
10.3 years ago Angel ▴ 40
1
vote
4
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1.9k
views
mutually add a tab in the beggining of the header to make it a valid RMA format
software error probe affy RMA
10.3 years ago Angel ▴ 40
6
votes
5
replies
3.3k
views
install package from local zip file
affy
10.3 years ago Angel ▴ 40
4
votes
3
replies
2.4k
views
MAS 5 package
affy
updated 10.3 years ago by ▴ 840 • written 10.3 years ago by ▴ 40
0
votes
1
reply
1.9k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
1
vote
1
reply
778
views
Error in a method
affy
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
0
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5
replies
6.0k
views
How to do Affy ST array analysis
Annotation Normalization hgu133a probe affy oligo Annotation Normalization hgu133a probe
updated 10.4 years ago by • 0 • written 11.4 years ago by ★ 13k
0
votes
3
replies
1.6k
views
namespace problem running GEOquery and justRMA in same session
affy geoquery
10.4 years ago Ty Thomson ▴ 100
0
votes
1
reply
1.9k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 10.4 years ago by • 0 • written 18.8 years ago by ▴ 170
1
vote
2
replies
3.8k
views
Affy HTA 2.0 array analysis
Annotation affy Annotation affy
updated 10.4 years ago by ▴ 20 • written 12.1 years ago by ▴ 360
9
votes
8
replies
4.1k
views
LIMMA producing too many significant results
LIMMA limma design matrix affy
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ▴ 30
2
votes
4
replies
1.9k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 10.5 years ago by 68k • written 10.5 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Processing K12 probe data from E. coli 2.0
affy normalization
10.5 years ago cporter • 0
0
votes
1
reply
998
views
Best way to load .cel files so as it consumes less memory
affy read in cel files
updated 10.5 years ago by ▴ 840 • written 10.5 years ago by • 0
0
votes
1
reply
2.0k
views
Reading in and normalising ht-hgu133a and hgu133a files together
hgu133a rma normalization affy
updated 10.5 years ago by ▴ 840 • written 10.5 years ago by • 0
0
votes
1
reply
3.5k
views
Array Express HuGene-1_1-st-v1 CDF problem
cdf microarray affy
updated 10.5 years ago by 68k • written 10.5 years ago by • 0
0
votes
0
replies
1.1k
views
Support for MouseDivGeno arrays in Bioconductor
snpchip microarray affy
10.5 years ago Sean Davis 21k
1
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10
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6.0k
views
How to use brainarray custom cdf with any bioconductor package?
affy oligo customcdf
10.8 years ago • updated 10.5 years ago rishi.dasroy ▴ 20
0
votes
3
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3.1k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy pd.hugene.2.0.st hugene20 annotation microarray
10.6 years ago kanacska ▴ 10
1
vote
3
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2.4k
views
QC probes in HTA2-0
affy qc simpleaffy HTA
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 40
0
votes
1
reply
985
views
several gene names for a probeID in affymetrix annotation file
affy annotation
updated 10.6 years ago by 68k • written 10.6 years ago by • 0
0
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1
reply
3.0k
views
Problem in the beginning
affy
10.6 years ago zillurbmb51 • 0
0
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2
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2.1k
views
Affymetrix file with probe set id
probe affy PROcess probe affy PROcess
updated 10.6 years ago by • 0 • written 21.0 years ago by ▴ 600
0
votes
3
replies
3.2k
views
filtering out probes with no gene symbol from expressionSet
probe filter subset gene symbol affy
10.6 years ago alakatos ▴ 130
0
votes
2
replies
3.8k
views
AffyMetrix CEL file; data is already transformed too log2
affy microarray bioinformatics
10.6 years ago kanacska ▴ 10
0
votes
3
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2.5k
views
Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 10
1
vote
3
replies
2.2k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.7 years ago federico.comoglio ▴ 100
4
votes
6
replies
6.1k
views
Proper way to build phenoData object?
limma affy biobase
updated 10.7 years ago by ★ 4.1k • written 10.7 years ago by ▴ 10
2
votes
6
replies
3.0k
views
Questions about analysis of GeneChip Rat Gene 2.0 ST Array
microarray affy oligo annotation
10.7 years ago khosoda • 0
1,805 results • Page 4 of 37
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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