Showing : Affymetrix • reset
1
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.4 years ago Mikołaj Mierzejewski • 0
1
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2
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1.4k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.4 years ago Mikołaj Mierzejewski • 0
0
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2
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2.1k
views
How to convert .CEL file to .VCF file?
vcf cell affymetrix
3.4 years ago jesus • 0
0
votes
1
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1.1k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
0
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1
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2.5k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
3
votes
4
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1.8k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq Affymetrix Mouse
updated 4.1 years ago by ★ 4.1k • written 4.1 years ago by • 0
5
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5
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1.5k
views
Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays from Geoquery
affycoretools huex10sttranscriptcluster.db affymetrix Geoquery
updated 4.6 years ago by 67k • written 4.6 years ago by ▴ 830
0
votes
3
replies
892
views
Input files for Affymetrix platform
Affymetrix CEL TXT
updated 4.9 years ago by 67k • written 4.9 years ago by ▴ 50
0
votes
1
reply
1.6k
views
Is GCRMA normalization possible with oligo?
oligo pd.moe430a gcrma affymetrix normalization
updated 5.0 years ago by • 0 • written 5.8 years ago by ★ 4.1k
0
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7
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2.3k
views
Annotation of probes from Affymetrix and Illumina platforms in MACQ project ?
Affymetrix Illumina probes microarray annotation package
updated 5.5 years ago by ★ 4.1k • written 5.5 years ago by • 0
0
votes
1
reply
841
views
differential expression analysis of rice
microarray differential expression analysis GPL2025 affymetrix
updated 5.6 years ago by ★ 28k • written 5.6 years ago by • 0
3
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3
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1.3k
views
Limma: Don't have .CEL Affymatrix Files.
limma affymetrix
updated 6.1 years ago by 51k • written 6.1 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
6.3 years ago CantExitVIM ▴ 10
0
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1
reply
1.1k
views
Affy Mouse Annotation
annotation affymetrix
updated 6.6 years ago by 67k • written 6.6 years ago by • 0
4
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5
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2.5k
views
Retrieving probes mapping to gene ID in microarray analysis
microarray affymetrix probeset probe
updated 7.1 years ago by ★ 6.6k • written 7.1 years ago by • 0
0
votes
2
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1.6k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 7.2 years ago by 67k • written 7.2 years ago by • 0
6
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7
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3.6k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo affycoretools hta2.0 affymetrix
updated 2.5 years ago by ▴ 10 • written 7.6 years ago by ▴ 830
1
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5
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2.0k
views
Filtering genes with missing Entrez ID using "nsFilter"
nsfilter affymetrix hugene10sttranscriptcluster.db annotation
updated 7.7 years ago by 67k • written 7.7 years ago by • 0
0
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0
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1.2k
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QC for Affymetrix Arrays
affymetrix affymetrix microarrays aroma
8.4 years ago gaiusjaugustus • 0
0
votes
3
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1.7k
views
frma: "mogene.2.0.stfrmavecs" availability?? - Gene Barcode 3.0
frma affymetrix barcode
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by • 0
3
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8
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2.6k
views
Error aroma.affymetrix [affxparser Fusion SDK exception]
affymetrix affxparser
updated 8.9 years ago by ★ 2.4k • written 8.9 years ago by ▴ 40
0
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1
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1.9k
views
PLIER normalization for Affymetrix GeneChip arrays?
microarray affymetrix oligo RMA normalization
updated 8.9 years ago by 67k • written 8.9 years ago by ▴ 20
3
votes
1
reply
1.7k
views
what is fitProbeLevelModel()? doing
affymetrix oligo microarray
updated 8.9 years ago by 67k • written 8.9 years ago by ▴ 20
5
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9
replies
4.5k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
9.0 years ago KB ▴ 50
0
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1
reply
1.4k
views
extract raw expression values in oligo package
oligo affymetrix raw expression
9.2 years ago queso012 • 0
0
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0
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1.5k
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News: Rebuilding annotation packages for Affymetrix Gene/Exon ST Arrays
affymetrix annotation microarray News
9.5 years ago James W. MacDonald 67k
0
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1
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1.3k
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Filtering out lowly expressed genes on Affymetrix Gene ST arrays
Affymetrix Gene ST limma
9.5 years ago knaxerova ▴ 10
0
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0
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1.1k
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Remove coexpressed gene pair modules using eisa package
isa2 eisa microarray affymetrix
9.5 years ago dhwani.dholakia • 0
2
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4
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2.4k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
affymetrix limma filtering
updated 9.5 years ago by 67k • written 9.5 years ago by • 0
2
votes
6
replies
1.8k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast limma pathway analysis differential gene expression affymetrix
9.6 years ago svlachavas ▴ 830
0
votes
2
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1.7k
views
Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration microarray bioconductor affymetrix biomarkers
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 830
2
votes
2
replies
1.1k
views
Is it possible some statistical evaluation with a few replicates and one control in microarray data analysis in r
r bioconductor affymetrix differential gene expression
updated 9.7 years ago by 67k • written 9.7 years ago by ▴ 830
0
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0
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2.4k
views
MAplot: Binning grid too coarse for current (small) bandwidth
affy affymetrix affymetrics affymetrixchip
9.8 years ago neverstop • 0
6
votes
5
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2.0k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes expression affymetrix pd.hugene.2.0.st limma
updated 9.8 years ago by 51k • written 9.8 years ago by ▴ 200
0
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1
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2.1k
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RNA degradation plot: why curves are so smooth?
normalization microarray affymetrix
updated 9.9 years ago by 67k • written 9.9 years ago by • 0
3
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15
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3.0k
views
Are the p-values supposed to be on the order of 10^-120?
limma affy bioconductor affymetrix
updated 10.1 years ago by 51k • written 10.1 years ago by • 0
36 results • Page 1 of 1
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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction by abadgerw • 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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