Showing : Annotation • reset
1
vote
1
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748
views
snp ids download
annotation
6.4 years ago kamalesh.27.27.kamalesh • 0
0
votes
4
replies
924
views
Need a BSgenome.Btaurus.UCSC.bostau9 package
annotation
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
2
votes
3
replies
1.2k
views
Export annotation from GenomicInteractions package
genomicInteractions annotation
updated 6.5 years ago by ▴ 140 • written 6.5 years ago by • 0
0
votes
2
replies
1.3k
views
Transcript biotypes downloaded from Biomart R package were not categorized same with Ensembl website
annotation
6.5 years ago llmiao • 0
0
votes
1
reply
742
views
How can I import KEGG annotations
deseq2 annotation
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
votes
1
reply
996
views
chippeakanno annotation
annotation
6.5 years ago yueli7 ▴ 20
0
votes
3
replies
1.6k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
6.5 years ago shepherl 4.2k
1
vote
2
replies
1.3k
views
"hgu133plus2db" package not working in R
microarray affy annotation
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
0
votes
1
reply
1.3k
views
News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
6.5 years ago shepherl 4.2k
0
votes
1
reply
787
views
How to get CpG sites
annotation
updated 6.5 years ago by ★ 5.0k • written 6.5 years ago by • 0
0
votes
2
replies
1.3k
views
installation of package IlluminaHumanMethylationEPICanno.ilm10b4.hg19 had non-zero exit status
annotation
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
0
votes
4
replies
1.9k
views
Gviz unable to retrieve cytoband data for sacCer3 when trying to create ideogram
annotation software error Gviz
updated 6.5 years ago by ▴ 750 • written 6.5 years ago by • 0
1
vote
3
replies
843
views
Genomic Coordinate Annoation
annotation
updated 6.5 years ago by • 0 • written 6.6 years ago by • 0
1
vote
4
replies
931
views
Package annotate and org.Hs.eg.db: can't look up ENTREZ by ENSEMBL gene
annotation
6.5 years ago Vitalina Komashko ▴ 10
1
vote
4
replies
1.8k
views
AnnotationHub Server denied you to change the given directory
annotation annotationhub
updated 6.5 years ago by 4.2k • written 6.6 years ago by ▴ 10
1
vote
4
replies
1.3k
views
Error in getClass(Class)
annotation software error
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
0
votes
0
replies
691
views
DMRcate; the sequence of the produced overlapping promoters
annotation
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
2
votes
3
replies
1.6k
views
Uniprot and UniProt.ws
Uniprot Annotation Identifiers
6.6 years ago Juliet Hannah ▴ 360
0
votes
1
reply
556
views
Finding unusual genomes with AnnotationHub
annotation
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
2
votes
8
replies
1.9k
views
affycoretools package, HTA 2.0 annotation query
annotation affy
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 10
6
votes
2
replies
3.0k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 6.6 years ago by 53k • written 6.6 years ago by ▴ 60
1
vote
1
reply
897
views
biomaRt retrieving only NAs for Oryza sativa gene descriptions/annotations
annotation
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by • 0
0
votes
1
reply
1.4k
views
BioMart web service you're accessing may be down
annotation
6.6 years ago massimo.x.petretich • 0
1
vote
1
reply
570
views
Error when retrieving gene name data using biomaRt
software error annotation Biomart
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by • 0
0
votes
2
replies
1.7k
views
makeTxDbFromGFF, GTF columns not included in the TxDb object
annotation
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
2
votes
2
replies
1.2k
views
Tximport error (probably annotation lowercase incompatibility)
arabidopsis tximport gtf annotation
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
1
vote
1
reply
586
views
add gene names to rlog transformation for heatmap using the library "org.Hs.eg.db"
deseq2 annotation
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 10
3
votes
5
replies
1.7k
views
HTA 2.0 Differential expression analysis - design question
limma hta affy annotation
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Is there a package to convert DNA coordinates to Cytogenetic location?
annotation coordinates cytogenetic
6.6 years ago Ahdee ▴ 60
0
votes
0
replies
1.1k
views
predictCoding warning message: serious or not?
software error annotation VariantAnnotation
updated 6.6 years ago by 4.2k • written 6.6 years ago by • 0
0
votes
1
reply
977
views
Differentially expressed genes in rice affymetrix data and annotation
affy microarray differentially expresed genes limma annotation
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
2
votes
27
replies
3.6k
views
Applying NetAffx biological annotation to Affymetrix gene expression dataset
microarray annotation
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 10
1
vote
1
reply
1.4k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by • 0
0
votes
2
replies
2.9k
views
liftover probe annotation from hg19 to hg38 for methylation array data using minfi (EPIC methylation array data)
annotation probe software error EPIC methylation array
6.7 years ago brendan.miller • 0
1
vote
1
reply
965
views
Annotating rice affymetrix data from different gse through biomart
annotation go
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
2
votes
4
replies
1.1k
views
I can't import my gff file by `importTransprits()`,when I worked with SGSeq.
software error annotation
updated 6.7 years ago by ▴ 260 • written 6.7 years ago by • 0
2
votes
2
replies
1.9k
views
AnnotationData Packages for GPL2507 Sentrix Human-6 Expression BeadChip
microarray annotation
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
1
vote
1
reply
1.4k
views
How to make combined annotation of 5'UTRs and CDS's?
annotation concatenation GRangesList GenomicRanges
6.7 years ago anmej • 0
1
vote
1
reply
3.3k
views
TxDb.Hsapiens.UCSC.hg38.knownGene In install.packages(pkgs = doing, lib = lib, ...) Non-Zero Exit Status
annotation UCSC doing lib mgcv
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
1
vote
7
replies
2.3k
views
Add annotation, biomaRt installation
software error annotation go
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by ▴ 10
0
votes
3
replies
592
views
Batch query to map gene identifier to chromosome location using plant db
annotation
6.7 years ago benjamin • 0
0
votes
5
replies
3.2k
views
Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
annotation go clusterProfiler org.Sc.sgd.db
6.7 years ago Malcolm Cook ★ 1.6k
1
vote
4
replies
1.8k
views
Heatmap vs heatmap.2
annotation
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
0
replies
975
views
maftools: frameshift substitution classification annovarToMaf
software error annotation
6.7 years ago ivan.molineris • 0
0
votes
7
replies
2.7k
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
1
reply
2.0k
views
How to convert a SingleCellExperiment into an ExpressionSet object?
microarray annotation
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
0
replies
1.5k
views
Error while annotating with Chipseeker
annotation chipseq
6.7 years ago hamaor • 0
2
votes
1
reply
735
views
Iterate through sever annotation database packages
R annotation
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
0
votes
1
reply
647
views
UNIPROT not available in org.EcK12.eg.db
annotation
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
0
votes
1
reply
1.6k
views
PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db update annotation go
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
1,978 results • Page 5 of 40
Recent ...
Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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