Showing : Annotation • reset
11
votes
23
replies
3.9k
views
crlmm support for Illumina arrays with no annotation package?
crlmm QCarray annotation
updated 5.9 years ago by • 0 • written 6.1 years ago by ▴ 30
0
votes
1
reply
653
views
I got error installing the annotation package i made using annotationforge
annotation
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
0
votes
1
reply
1.3k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
5.9 years ago shepherl 4.2k
0
votes
1
reply
544
views
Gviz GeneRegionTrack labels on Y ais
annotation
updated 5.9 years ago by 68k • written 5.9 years ago by ▴ 90
0
votes
1
reply
983
views
exonsBy (ENSG -> gene id mapping)
annotation
updated 5.9 years ago by 68k • written 5.9 years ago by ▴ 10
0
votes
4
replies
898
views
Error in biomaRt
annotation
updated 5.9 years ago by • 0 • written 5.9 years ago by • 0
0
votes
1
reply
652
views
Ensembl v75 annotation - difference between non-coding and intron
annotation
5.9 years ago sara.blocquiaux • 0
3
votes
5
replies
2.0k
views
affycoretools::annotateEset(eset, pd.ht.hgu133.plus.pm) return error
affycoretools annotation HT HG-U133+ PM Array
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 40
2
votes
6
replies
1.7k
views
Can't find library BSgenome.Mmulatta.UCSC for latest genome (mmul10)
annotation mmul10 BSgenome
updated 6.0 years ago by 16k • written 6.0 years ago by ▴ 40
3
votes
0
replies
1.8k
views
News: EnsDb databases for Ensembl release 98 provide now also transcripts' GC content
annotation ensembldb EnsDb AnnotationHub News
6.0 years ago Johannes Rainer ★ 2.1k
0
votes
2
replies
2.0k
views
RNA-seq from Nanopore featureCounts
software error annotation
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
1
reply
730
views
CRISPRseek gRNA searching
annotation
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by • 0
2
votes
2
replies
1.7k
views
how to choose annotation file in AnnotationHub web server
annotation AnnotationHub
6.0 years ago 15958021290 ▴ 10
0
votes
0
replies
1.2k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
6.0 years ago shepherl 4.2k
0
votes
2
replies
2.5k
views
News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
6.1 years ago • updated 6.0 years ago shepherl 4.2k
1
vote
2
replies
927
views
Label points on DESeq2 MA plot with interval list
deseq2 maplot annotation
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 60
0
votes
0
replies
435
views
pipeline for gRNA libraries design
annotation
6.0 years ago XIN1988 • 0
2
votes
8
replies
2.2k
views
Question: Easy way to fetch the first exons from genome
annotation
updated 6.0 years ago by 16k • written 6.0 years ago by • 0
0
votes
1
reply
559
views
A question about the results of DESeq2
deseq2 annotation
updated 6.0 years ago by ★ 4.0k • written 6.0 years ago by • 0
2
votes
6
replies
1.4k
views
CRISPR SEEK TxDb issue
annotation
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by • 0
0
votes
1
reply
661
views
ENCODExplorer metadata Questions
annotation software error ENCODE
updated 6.0 years ago by 4.2k • written 6.0 years ago by • 0
0
votes
1
reply
635
views
Annotation Packages other than Dbi
Annotation Custom
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
2
replies
1.4k
views
Annotation Using GEOquery
Annotation GEO TXT
updated 6.0 years ago by 21k • written 6.0 years ago by • 0
0
votes
1
reply
2.5k
views
How to Annotate my Clariom D Human Array?
ClariomDHuman Annotation 3 groups
updated 6.0 years ago by 68k • written 6.1 years ago by • 0
1
vote
2
replies
999
views
error when using biomart to exchange gene ID
software error annotation
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 20
0
votes
1
reply
636
views
Annotation Dbi replaced by utils
microarray annotation
6.1 years ago ekl • 0
2
votes
2
replies
1.6k
views
Error when calling AnnotationHub()
annotation
updated 6.1 years ago by 4.2k • written 6.1 years ago by ▴ 10
0
votes
3
replies
1.6k
views
How to decide on genes linked by differential binding peaks in opposite conditions.
annotation
updated 6.1 years ago by ★ 5.2k • written 6.1 years ago by • 0
1
vote
1
reply
1.5k
views
TxDb.Hsapiens.UCSC.hg19.knownGen installation fail - non-zero exit status
software error annotation
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
0
votes
0
replies
1.0k
views
News: Bioconductor 3.10 db0s are available
news release annotation db0 deadline News
6.1 years ago kayla.interdonato ▴ 160
0
votes
1
reply
1.9k
views
Cannot Install Org.Hs.eg.db package in RStudio
software error annotation go
updated 6.1 years ago by 4.2k • written 6.1 years ago by • 0
3
votes
5
replies
2.1k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 10
4
votes
4
replies
18k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
annotation
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
0
votes
0
replies
1.4k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
6.2 years ago • updated 6.1 years ago shepherl 4.2k
0
votes
1
reply
1.9k
views
Annotationhub V2.16.1 Error info
annotation software error
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
6
votes
4
replies
4.9k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 6.2 years ago by 68k • written 6.2 years ago by ▴ 30
2
votes
2
replies
2.7k
views
Filtering GFF3 file
annotation gff3 gff genome
updated 6.2 years ago by ★ 11k • written 6.2 years ago by ▴ 10
0
votes
1
reply
1.4k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
6.3 years ago • updated 6.2 years ago shepherl 4.2k
1
vote
3
replies
2.1k
views
ggbio - change transcript label sizes
ggbio annotation
updated 3.6 years ago by ▴ 50 • written 6.2 years ago by ★ 4.0k
0
votes
5
replies
1.8k
views
EnsemblGene ID conversion
deseq2 annotation Tutorial
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
votes
1
reply
1.1k
views
Determining survival correlation among probes
annotation probe microarray
6.3 years ago sbrackett007 • 0
0
votes
1
reply
907
views
Choosing Gene ontology package
go annotation GOenrichment
updated 6.3 years ago by ▴ 760 • written 6.3 years ago by • 0
3
votes
2
replies
8.9k
views
ComplexHeatmap removes row labels if annotation is added
annotation show_row_names complexheatmap
6.3 years ago alexw858 • 0
0
votes
1
reply
2.9k
views
cnetplot graph independently.
go annotation
updated 6.3 years ago by • 0 • written 6.3 years ago by • 0
1
vote
1
reply
2.0k
views
SNP Flanking Seq
annotation
updated 6.3 years ago by 25k • written 6.3 years ago by ▴ 20
1
vote
0
replies
1.3k
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
6.4 years ago Johannes Rainer ★ 2.1k
0
votes
5
replies
2.9k
views
Install a custom CDF file
makecdf RMA annotation biobase GEOquery
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
1
vote
1
reply
748
views
Gviz and AnnotateTrack and memory usage
annotation
6.4 years ago rejpl ▴ 10
0
votes
2
replies
1.3k
views
u133aaofav2 platform gcrma Normalization
u133aaofav2 annotation gcrma
6.4 years ago samane.khoshbakht • 0
1
vote
2
replies
724
views
BioMart webservice returned an invalid result
software error annotation BioMart
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 20
1,978 results • Page 4 of 40
Recent ...
Replies
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Kevin Blighe ★ 4.0k
There are alternative explanations for why these samples are so similar. The similarity could result from low biological variability in gen…
Votes
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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