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Showing :
BioMart
•
reset
1
vote
2
replies
1.8k
views
getLDS across both "normal" Ensembl biomart and plants.ensembl.org biomart
R
biomart
updated 2.8 years ago by
Yun
• 0 • written 7.4 years ago by
devmoy
• 0
8
votes
10
replies
2.3k
views
Genes listed in GO categories
goseq
biomart
updated 7.4 years ago by
Gordon Smyth
53k • written 7.4 years ago by
frezende
• 0
2
votes
1
reply
2.9k
views
TCGA biomart conversion
biomart
updated 7.4 years ago by
Mike Smith
★ 6.6k • written 7.4 years ago by
jarod_v6@libero.it
▴ 40
0
votes
1
reply
890
views
biomaRt - getBM() taking longer to run than usual ?
biomart
7.4 years ago
Pierre-François Roux
• 0
1
vote
2
replies
926
views
BiomaRt - hsapiens dataset from Ensembl_Mart_Ensembl not recognised by R
biomart
updated 7.5 years ago by
Mike Smith
★ 6.6k • written 7.5 years ago by
alisha.aman
• 0
0
votes
1
reply
629
views
cannot reproduce biomaRt vignette
biomaRt
updated 7.5 years ago by
Mike Smith
★ 6.6k • written 7.5 years ago by
karl.nordstroem
• 0
1
vote
2
replies
1.4k
views
Trouble using getBM with ecaballus_gene_ensembl
biomart
biomartr
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
stephen.williams
▴ 10
0
votes
1
reply
1.0k
views
Biomart expection using values filter
biomart
updated 7.5 years ago by
Mike Smith
★ 6.6k • written 7.5 years ago by
jarod_v6@libero.it
▴ 40
1
vote
4
replies
4.9k
views
ensembl not working...?
ensembl
biomart
7.5 years ago
JoeMG
• 0
0
votes
2
replies
995
views
biomaRt getBM error
biomart
7.5 years ago
array chip
▴ 420
0
votes
2
replies
1.6k
views
Difference between biomart R and biomart website GO query
biomart
ensemblbiomart
go
getbm
updated 7.6 years ago by
Mike Smith
★ 6.6k • written 7.6 years ago by
daniel.gaffney
▴ 20
0
votes
4
replies
1.3k
views
Annotation of DEXSeqHTML with biomaRt
dexseq
biomart
7.6 years ago
Matthew Thornton
▴ 380
0
votes
0
replies
1.1k
views
News:
Ensembl 92 has been released
biomart
ensembl
release
ensembl92
News
7.6 years ago
Thomas Maurel
▴ 800
1
vote
1
reply
1.1k
views
what is wrong with biomart
biomart
updated 7.6 years ago by
soulsacross
• 0 • written 7.8 years ago by
Bioinformatics
▴ 30
6
votes
1
reply
1.9k
views
biomart R code cannot retrieve gene symbol
biomart
ensemblbiomart
ensemble mart
7.6 years ago
emmak
▴ 20
0
votes
2
replies
1.2k
views
Chromosme Name: "CHR_HSCHR19..."
biomart
ensembl
grch38
7.6 years ago
rbenel
▴ 50
0
votes
1
reply
1.2k
views
Problem retrieving data from "ENSEMBL_MART_SNP" database
biomart
ensembl
7.6 years ago
AROA SUÁREZ VEGA
▴ 20
0
votes
3
replies
2.9k
views
incorrect biomaRt output order of gene list
biomart
ensembldb
error
7.7 years ago
Yuqia
• 0
0
votes
4
replies
1.5k
views
Biomart error message
biomart
7.7 years ago
Aurora
▴ 20
3
votes
4
replies
17k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart
error
ensembldb
7.7 years ago
Yuqia
• 0
0
votes
1
reply
1.6k
views
Annotating outdated SNP identifiers
variants
variantannotation
SNPlocs.Hsapiens.dbSNP150.GRCh38
biomaRt
7.7 years ago
sandmann.t
▴ 70
1
vote
4
replies
2.1k
views
biomaRt scan error for latest assembly when indicating version Number
biomart
rstudio
ensembl mart
updated 7.7 years ago by
Mike Smith
★ 6.6k • written 7.7 years ago by
mullpaul
• 0
0
votes
4
replies
2.5k
views
biomaRT getBM error
biomart
getbm
ensembl
updated 7.7 years ago by
Mike Smith
★ 6.6k • written 7.7 years ago by
scanchi
• 0
0
votes
2
replies
1.1k
views
make a dash instead those gene that do not have ortologue
biomart
updated 7.7 years ago by
Mike Smith
★ 6.6k • written 7.7 years ago by
Bioinformatics
▴ 30
0
votes
2
replies
1.5k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
7.7 years ago
lluex.rova
• 0
0
votes
2
replies
929
views
biomaRt inconsistent errors with hsapiens_gene_ensembl
biomart
7.7 years ago
Brian Gudenas
• 0
0
votes
1
reply
2.2k
views
Scan issue retrieving Drosophila Genes with biomaRt
R
biomart
drosophila melanogaster
ensembl
updated 7.7 years ago by
Mike Smith
★ 6.6k • written 7.7 years ago by
JD
• 0
1
vote
4
replies
2.0k
views
Error in getBM--cannot connect to MySQL
biomart
updated 4.4 years ago by
Mao Tian
• 0 • written 7.7 years ago by
grrompala
• 0
0
votes
1
reply
1.8k
views
biomaRt getSequence: transcript_exon_intron versus gene_exon_intron?
biomart
ensemblbiomart
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
Katherine Huang
• 0
7
votes
2
replies
6.3k
views
getBM error: The query to the BioMart webservice returned an invalid result
biomart
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
Gregulator
▴ 30
1
vote
2
replies
1.6k
views
Accessing a local version of BioMart (v0.9) using biomaRt
biomart
R
rest
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
Alex
• 0
0
votes
1
reply
1.6k
views
how to set boolean filter
biomart
ensembl
boolean filter
7.8 years ago
shenwei1376
• 0
1
vote
3
replies
1.8k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
rbronste
▴ 60
0
votes
1
reply
1.2k
views
Counting the number of paralogues for mouse genes gives me the wrong frequency
R
bioconductor
biomart
bioinformatics
7.8 years ago
Jack
• 0
1
vote
1
reply
1.5k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl
transcripts
getbm
biomart
7.8 years ago
hihi.joshi
• 0
2
votes
2
replies
2.2k
views
BiomaRT URLs down? 404 Not Found
biomart
bioconductor
support.bioconductor.org
biocinstaller
install
7.8 years ago
n.pantelireis16
• 0
0
votes
4
replies
1.2k
views
how can I annotate some of my genes
biomart
r
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
Bioinformatics
▴ 30
0
votes
4
replies
1.8k
views
how can I configure my proxy to get connected to biomart
biomart
connection
host
7.8 years ago
Bioinformatics
▴ 30
1
vote
1
reply
3.9k
views
How can I extract the human paralogues from a list of genes using BioMart?
BioMart
paralog genes
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
Jack
• 0
1
vote
3
replies
1.9k
views
biomaRt encoding - string char expected
biomaRt
encoding
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
TriS
▴ 200
3
votes
1
reply
1.0k
views
Error in makeTxDbFromBiomart for fungi_mart
genomicfeatures
biomart
7.8 years ago
JohnTownsend
▴ 20
11
votes
5
replies
4.6k
views
Scan error using biomart with version option
biomart
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.9 years ago by
Chris Stubben
▴ 40
0
votes
2
replies
2.0k
views
Error in useMart while using a dataset in biomaRt
biomaRt
bioconductor
celegans
annotation
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
clarisbaby
• 0
0
votes
4
replies
2.6k
views
biomaRt getBM error in scan
biomart
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
e.everman
• 0
0
votes
5
replies
3.2k
views
getBM in loop
biomart
ensembl
curl
updated 7.9 years ago by
Mike Smith
★ 6.6k • written 7.9 years ago by
Tiphaine Martin
▴ 40
1
vote
5
replies
3.3k
views
biomaRt is not working
biomart
7.9 years ago
shenwei1376
• 0
3
votes
4
replies
2.2k
views
listDatasets(ensembl) displays strange behavior + scerevisiae_gene_ensembl not available on biomaRt?
biomart
bioconductor
7.9 years ago
Emmanuel Levy
▴ 270
6
votes
5
replies
9.5k
views
biomaRt: error using useDataset or useMart
software error
biomart
usemart
usedataset
updated 7.9 years ago by
Mike Smith
★ 6.6k • written 7.9 years ago by
lpsantamaria
▴ 40
6
votes
2
replies
3.4k
views
The query to the BioMart webservice returned an invalid result: the number of columns in the result table does not equal the number of attributes in …
biomart
number of columns in the result table does not equal the number of attributes in the query
updated 7.9 years ago by
thokall
▴ 160 • written 7.9 years ago by
ang
▴ 20
5
votes
16
replies
4.3k
views
biomaRt error in getBM for hsapiens_gene_ensembl
biomart
updated 7.9 years ago by
romicakerketta
• 0 • written 7.9 years ago by
rbacher
▴ 20
1,082 results • Page
7 of 22
Recent ...
Replies
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
by
James W. MacDonald
68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
by
shepherl
4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
by
shepherl
4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes
by
Daniel Cameron
▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data
by
Alexander
• 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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