Showing : Biomart • reset
1
vote
1
reply
1.8k
views
Question about EAGenes (TCGAbiolinks)
annotation cancer biomart genetics R
updated 9.6 years ago by ▴ 260 • written 9.6 years ago by • 0
2
votes
2
replies
2.6k
views
How to get list of E.coli genes wit their details on Genome?
biomart maketxdbfrombiomart granges
updated 9.6 years ago by 6.7k • written 9.6 years ago by ▴ 50
2
votes
2
replies
2.1k
views
data acquisition using biomaRt
biomart
9.6 years ago maedakus ▴ 10
1
vote
4
replies
1.6k
views
Using getSequence in BiomaRt to obtain snp's
biomart
9.7 years ago ken.mcgarry • 0
0
votes
0
replies
1.4k
views
Low yield mapping ensembl transcript ids to entrez gene ids in biomart
biomart ensembl ensemble mart entrez gene identifiers
9.7 years ago serpalma.v ▴ 60
0
votes
4
replies
2.9k
views
an annotation error when using RIPSeeker
RIPSeeker biomart
9.8 years ago xfwang ▴ 20
2
votes
7
replies
2.2k
views
GEO MicroArray Download, Annotation, and Main Probe Filtering
microarray affy biomart
9.8 years ago anthonycolombo60 • 0
2
votes
2
replies
1.5k
views
Querying individual mart instances
biomart
9.9 years ago • updated 9.8 years ago Laurent Gatto 1.6k
4
votes
5
replies
2.2k
views
ChIPpeakAnno getAnnotation request fail
chippeakanno biomart ensembl
9.8 years ago igor ▴ 50
1
vote
0
replies
1.6k
views
biomaRt getBM returns allele as logical instead of character
biomart getBM logical error
9.8 years ago Christian Ruckert ▴ 170
0
votes
3
replies
2.6k
views
Connection error using biomaRt
biomart annotation
updated 4 months ago by • 0 • written 9.8 years ago by ▴ 10
0
votes
7
replies
5.5k
views
Can't match on some, but not all, Illumina probe IDs using biomaRt
R biomart illumina human ht-12 v4
updated 9.9 years ago by ▴ 800 • written 9.9 years ago by • 0
0
votes
1
reply
1.6k
views
biomaRt fails to connect
biomaRt
updated 9.9 years ago by ▴ 800 • written 9.9 years ago by • 0
0
votes
0
replies
1.9k
views
News: Ensembl 83 is out!
ensemble mart ensembl biomart ensembl release News
9.9 years ago amonida ▴ 20
0
votes
2
replies
2.4k
views
seemingly erratic responses to different getBM biomaRt requests depending on the attributes requested
getbm biomart
updated 9.9 years ago by ▴ 800 • written 9.9 years ago by ▴ 10
3
votes
2
replies
4.9k
views
BiomaRt Arabidopsis genome unavailable
biomart retrive sequence
9.9 years ago oberlins ▴ 10
1
vote
2
replies
1.7k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
10
votes
5
replies
7.2k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
10.0 years ago • updated 9.9 years ago anchel.gonzalez • 0
9
votes
4
replies
6.4k
views
How to access Emsembl plants with biomaRt
biomart
9.9 years ago naholi.alejandri ▴ 50
2
votes
14
replies
4.7k
views
Unimart not available in 2015?
biomart uniprot unimart
9.9 years ago john ▴ 10
0
votes
2
replies
1.5k
views
biomaRt getGene error
biomart
updated 9.9 years ago by ▴ 800 • written 9.9 years ago by ▴ 980
2
votes
10
replies
4.0k
views
biomaRt package problem
biomart
updated 9.9 years ago by ▴ 800 • written 9.9 years ago by • 0
5
votes
6
replies
3.8k
views
Reactome pathway names from IDs?
biomart reactome reactome.db id
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 680
1
vote
6
replies
10k
views
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq r biomart
updated 9.9 years ago by ★ 2.1k • written 9.9 years ago by ▴ 40
1
vote
3
replies
2.9k
views
getSequence from biomaRt but Error in martCheck
R biomart ensemble mart
updated 10.0 years ago by 16k • written 10.0 years ago by • 0
0
votes
0
replies
1.3k
views
oposSOM error connecting to ensembl
software error biomart oposSOM
updated 10.0 years ago by 25k • written 10.0 years ago by • 0
0
votes
1
reply
1.3k
views
Diffficulty to use Postgwas package since Biomart web service is down
biomart Problem with biomart's listMarts function
updated 10.0 years ago by 68k • written 10.0 years ago by • 0
2
votes
12
replies
4.1k
views
Error: failed to load 'AnnotationHub' resource
biomart annotationhub
updated 10.0 years ago by 25k • written 10.0 years ago by ▴ 10
1
vote
2
replies
7.0k
views
change the biomaRt host
biomaRt
updated 10.0 years ago by ▴ 140 • written 10.0 years ago by ▴ 100
6
votes
7
replies
6.2k
views
BiomaRt workaround when Biomart server closed
biomart
updated 10.0 years ago by • 0 • written 10.0 years ago by ▴ 30
3
votes
1
reply
5.0k
views
Best way to convert ensembl id to mgi?
annotation biomart
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 90
19
votes
4
replies
6.2k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 10.0 years ago by ▴ 140 • written 10.0 years ago by ▴ 680
3
votes
2
replies
1.8k
views
biomaRt error when creating a mart object
biomart
updated 10.0 years ago by ★ 2.1k • written 10.0 years ago by ★ 1.5k
1
vote
4
replies
4.6k
views
How to get 'previous symbols'? is there HGNC Mart connection?
biomart HGNC
updated 10.0 years ago by 53k • written 10.0 years ago by ▴ 40
4
votes
7
replies
3.4k
views
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
makeTxDbFromBiomart genomicfeatures txdb biomart
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 50
0
votes
5
replies
2.6k
views
getBM biomaRt returns different results for the same attribute, depending on which attributes I request
biomart
updated 10.1 years ago by ▴ 800 • written 10.1 years ago by ▴ 10
0
votes
0
replies
1.8k
views
News: Ensembl GRCh37 release 82 - second data update
ensembl biomart News grch37 GRCh37
10.1 years ago amonida ▴ 20
1
vote
2
replies
1.2k
views
problem with getBM biomaRt - error message asks to post to mail list (sorry for repost)
biomart
updated 10.1 years ago by ▴ 800 • written 10.1 years ago by ▴ 10
0
votes
0
replies
1.4k
views
News: Ensembl release 82 is out!
biomart ensembl release82 variation mouse News
10.1 years ago Thomas Maurel ▴ 800
0
votes
1
reply
1.5k
views
ncRNA search using biomaRt
biomart ncrna
updated 10.1 years ago by ▴ 800 • written 10.1 years ago by ▴ 20
0
votes
0
replies
1.5k
views
scan() error when using biomaRt::getBM()
biomart scan error
10.1 years ago enricoferrero ▴ 680
0
votes
0
replies
1.4k
views
Missing/inconsistent data with BiomaRt getBM() query
biomart getBM
10.1 years ago yg246 • 0
0
votes
3
replies
3.0k
views
biomaRt fails for M.musculus annotation, Ensembl version 80
biomart ensembl
updated 10.1 years ago by ▴ 20 • written 10.1 years ago by ▴ 80
0
votes
0
replies
1.4k
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
10.2 years ago koenhendriks89 • 0
0
votes
5
replies
3.1k
views
Question about the database version and MAF value in biomaRt
R biomart MAF
updated 10.2 years ago by ▴ 800 • written 10.2 years ago by • 0
2
votes
1
reply
1.5k
views
Find human SNP orthologous flanking sequence
bioconductor biomart
updated 10.2 years ago by ★ 7.2k • written 10.2 years ago by ▴ 30
2
votes
6
replies
3.2k
views
Working with Arabidopsis Databases
bsgenome biomart getPromoterSeq txdb
10.2 years ago oliwindram ▴ 10
5
votes
2
replies
3.4k
views
News: Ensembl release 81 is out!
human mouse GRCh38 biomart Ensembl News
updated 10.3 years ago by ▴ 390 • written 10.3 years ago by ▴ 800
2
votes
4
replies
14k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 10.3 years ago by ▴ 760 • written 10.5 years ago by ▴ 30
0
votes
2
replies
1.9k
views
Ensembl database query with biomart behaves strangely when using chromosomes as filter values
biomart ensembl
updated 10.3 years ago by ▴ 800 • written 10.4 years ago by ▴ 20
1,081 results • Page 10 of 22
Recent ...
Replies
Comment: deseq2 filter the low counts by empty_mt • 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions by Michael Love 43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Comment: bake() and cool() resulting in an empty table by Francesc • 0
Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…
Votes
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
Awards • All
Popular Question to Maria Doyle ▴ 100
Popular Question to Gordon Smyth 53k
Oracle to shepherl 4.2k
Popular Question to Matej • 0
Popular Question to Hervé Pagès 16k
Locations • All
United Kingdom, 1 minute ago
Chile, 7 minutes ago
United States, 20 minutes ago
United States, 1 hour ago
Kenya, 1 hour ago
Traffic: 1131 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6