Showing : Chippeakanno • reset
0
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3
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969
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ChIPpeakAnno can not load data
genomes ChIPpeakAnno
written 16 months ago by • 0
0
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0
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1.2k
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FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
20 months ago Raghad • 0
0
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0
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898
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
24 months ago nilanjanamani88 • 0
1
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5
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1.9k
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ChIPpeakAnno annotatePeakInBatch output
ChIPpeakAnno
2.3 years ago ilaria.maurizio • 0
0
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0
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853
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Why there are two pfms in the result of oligoSummary function of ChIPpeakAnno package?
ChIPpeakAnno ChIPSeq MotifDiscovery
2.4 years ago franciscrick41 • 0
3
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7
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1.8k
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Genes in open chromatin region
ChIPpeakAnno DiffBind
written 2.4 years ago by ▴ 20
2
votes
14
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2.7k
views
ChIPpeakAnno: S.lycopersicum annotation missing
ChIPpeakAnno ChIPSeq
updated 2.5 years ago by 68k • written 2.5 years ago by ▴ 10
0
votes
1
reply
954
views
genomeStyles error in ChIPpeakAnno
Chippeakanno ChIPpeakAnno
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
2
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1.4k
views
annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 2.8 years ago by ▴ 70 • written 2.8 years ago by ▴ 140
9
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16
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3.2k
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
2.8 years ago Chris ▴ 20
1
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2
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1.2k
views
How to map geneIds to ENTREZIDs
Xenopus_laevis ChIPpeakAnno
3.0 years ago stacy.genovese • 0
1
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1
reply
1.1k
views
Interpretation of $vennCounts output "Others"
ChIPpeakAnno
updated 3.1 years ago by ★ 1.3k • written 3.1 years ago by ▴ 10
0
votes
2
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1.2k
views
Empty matrix
ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene
3.3 years ago michela ▴ 20
0
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1
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1.1k
views
Trying to understand the `select` option in `annotatePeakInBatch` function of `ChIPpeakAnno` package.
ChIPpeakAnno
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
1
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1
reply
1.1k
views
How can I do pathway analysis by ChipPeakAnno package?
ChIPpeakAnno
3.5 years ago mehdi • 0
0
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1
reply
1.2k
views
AssignChromosomeRegion not working in Rstudio 4.2
ChIPpeakAnno ChIPSeq
updated 3.7 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
1
reply
1.4k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.8 years ago by ▴ 70 • written 3.9 years ago by ▴ 670
1
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2
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2.5k
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another problem when converting bed to granges using togranges
ChIPpeakAnno
4.0 years ago Bakhtiyar • 0
0
votes
2
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1.6k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
4.0 years ago Bogdan ▴ 670
2
votes
6
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3.9k
views
Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 4.0 years ago by ▴ 70 • written 4.0 years ago by • 0
0
votes
0
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1.2k
views
findOverlapsOfPeaks - peaklist of connectedPeaks="min:
findOverlapsOfPeaks ChIPpeakAnno chipseq
4.2 years ago Nadav • 0
1
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2
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3.6k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
4.2 years ago lexi.kellington • 0
0
votes
4
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2.9k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"])
ChIPpeakAnno
4.3 years ago • updated 4.2 years ago Tongjun • 0
1
vote
6
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2.5k
views
Annotation by CHIPeakAnno tool
ChIPpeakAnno
4.6 years ago Arunima ▴ 10
1
vote
3
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1.4k
views
genomicElementDistribution function not found
ChIPpeakAnno
updated 4.6 years ago by ★ 4.3k • written 4.6 years ago by ▴ 10
2
votes
2
replies
1.9k
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
4.9 years ago Lucky • 0
7
votes
9
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3.2k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by ▴ 140
2
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2
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1.3k
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
5.5 years ago C T ▴ 140
1
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2
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1.4k
views
How to get 'shortest' distance with ChIPpeakAnno::binOverFeature
ChIPpeakAnno
6.5 years ago liruiradiant • 0
0
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1
reply
1.6k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 4.7 years ago by • 0 • written 6.7 years ago by • 0
0
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4
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1.9k
views
chippeakanno file reading error
ChiPpeakAnno
6.9 years ago saddamhusain77 • 0
1
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6
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2.1k
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
7.0 years ago ngs06 ▴ 20
2
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10
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4.5k
views
ChIPpeakAnno, MACS format annotation
bioconductor ChIPpeakAnno
updated 7.1 years ago by ★ 4.3k • written 8.9 years ago by ▴ 30
0
votes
7
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2.3k
views
ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
chippeakanno chipseq R
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
3
votes
6
replies
2.4k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
7.5 years ago 94133 • 0
0
votes
1
reply
1.6k
views
Error creating pool for permutation test (PeakPermTest)
permutation pool chippeakanno
7.6 years ago ge2sasag • 0
1
vote
1
reply
1.4k
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
2
votes
2
replies
2.2k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 8.0 years ago by ★ 6.6k • written 8.0 years ago by ▴ 70
0
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3
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1.9k
views
integer overflow in ChIPpeakAnno assignChromosomeRegion
ChIPpeakAnno assignChromosomeRegion
updated 8.0 years ago by ★ 4.3k • written 8.0 years ago by ▴ 740
1
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1
reply
1.3k
views
Custom regions in assignChromosomeRegion?
chippeakanno
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
1
vote
2
replies
3.2k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
8.1 years ago inzirio ▴ 10
1
vote
4
replies
2.0k
views
ChIPpeakAnno binOverGene error
chippeakanno binOverGene
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by • 0
0
votes
1
reply
1.6k
views
ChIPpeakAnno to find peaks nearest to miRNA
ChIPpeakAnno ChIPpeakAnno
updated 8.3 years ago by • 0 • written 13.2 years ago by ▴ 120
2
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3
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3.4k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 8.3 years ago by • 0 • written 10.3 years ago by • 0
0
votes
1
reply
1.9k
views
featureAlignedSignal() error: deparse(sig): object 'sig' not found.
bioconductor chippeakanno featureAlignedDistribution featureAlignedSignal
updated 8.3 years ago by • 0 • written 9.4 years ago by • 0
0
votes
1
reply
1.4k
views
Help for ChIP script !! Error message while installing packages
annotation chippeakanno
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
5
votes
4
replies
6.0k
views
What are out-of-bound ranges? Is it necessary to get rid of them?
r ChIPpeakAnno
8.8 years ago • updated 8.6 years ago salamandra ▴ 20
4
votes
3
replies
1.9k
views
Annotation Database for ChIPpeakAnno
ChIPpeakAnno
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by ▴ 110
1
vote
1
reply
1.5k
views
Regarding ChIPpeakAnno installation error
chippeakanno
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 10
0
votes
3
replies
3.3k
views
ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is different than output of ol1$overlappingPeaks
chippeakanno
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
179 results • Page 1 of 4
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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