Showing : GEOquery • reset
2
votes
15
replies
7.5k
views
GEOquery: getGEO() doesn\'t work (error \"invalid \'nlines\' argument\")
GEOquery GEOquery
updated 9.3 years ago by 58k • written 9.3 years ago by ★ 12k
5
votes
14
replies
9.6k
views
How to load GEO series matrix file in R Bioconductor
geoquery
updated 6.2 years ago by 21k • written 6.2 years ago by ▴ 10
2
votes
13
replies
1.6k
views
SCAN.UPC: exception thrown when loading GEOQuery
scan.upc geoquery rcurl
6.7 years ago lep ▴ 90
5
votes
12
replies
902
views
Using eset while parsing GSE file located in a path
GEO geoquery
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 20
3
votes
11
replies
2.0k
views
GEOquery http:// url error
geoquery error getgeo microarray geo
updated 3.7 years ago by 21k • written 4.4 years ago by • 0
3
votes
11
replies
940
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression geoquery GSE bioconductor microarray
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 20
0
votes
8
replies
1.7k
views
GEOquery Error
GEOquery GEOquery
updated 9.6 years ago by 21k • written 9.6 years ago by ▴ 340
4
votes
8
replies
4.8k
views
getGEO - cannot Open URL issue
getGEO R GEOquery
5.9 years ago alptaciroglu ▴ 50
2
votes
7
replies
801
views
Not able to reproduce limma results from affy chip with or without CEL file from 2 GSE datasets
limma GEOquery affy
updated 4.5 years ago by 58k • written 4.5 years ago by • 0
1
vote
7
replies
676
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
3.6 years ago darthratus • 0
0
votes
7
replies
2.2k
views
Normalizing Expressionset Exprs without Raw CEL files
geoquery normalization
updated 6.9 years ago by ▴ 570 • written 6.9 years ago by ▴ 20
0
votes
7
replies
1.6k
views
Getting annotation into eset
limma GEOquery limma GEOquery
updated 10.9 years ago by 21k • written 10.9 years ago by ▴ 120
10
votes
7
replies
1.1k
views
SummarizedExperiment object from GEOquery obtained GSE
geoquery summarizedexperiment GEO matrix
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 60
0
votes
6
replies
2.0k
views
processing Illumina HT12v4.0 expression data from GEO
Normalization affy PROcess GEOquery frma Normalization affy PROcess GEOquery frma
updated 7.2 years ago by 21k • written 7.2 years ago by ▴ 170
2
votes
6
replies
7.3k
views
GEOquery: how to extract experimental data? (confused)
PROcess GEOquery PROcess GEOquery
updated 10.1 years ago by ▴ 60 • written 10.1 years ago by ★ 1.9k
0
votes
6
replies
1.1k
views
GEOquery and parsing SOFT files
GEOquery GEOquery
updated 12.3 years ago by 13k • written 12.3 years ago by ▴ 180
0
votes
6
replies
1.0k
views
Puma question
cdf GEOquery puma cdf GEOquery puma
10.9 years ago Manca Marco PATH ▴ 340
3
votes
6
replies
1.1k
views
GEOquery: HTTP error 403
GEOquery GEO HTTP error 403
2.4 years ago andy_shaps ▴ 10
0
votes
6
replies
1.3k
views
GEOquery and GSE error
GEOquery GEOquery
updated 10.0 years ago by 21k • written 10.0 years ago by ▴ 760
0
votes
6
replies
796
views
installation error of a bioconductor package in my workspace
GEOquery GEOquery
updated 9.4 years ago by ▴ 680 • written 9.4 years ago by ★ 8.2k
0
votes
5
replies
1.0k
views
installation error of a bioconductor package in my workspace
GEOquery GEOquery
9.4 years ago carol white ▴ 680
0
votes
5
replies
1.1k
views
getGEO error
GEOquery GEOquery
updated 8.7 years ago by 21k • written 8.7 years ago by ▴ 440
0
votes
5
replies
1.2k
views
XML package - 500 internal server error
GEOquery ArrayExpress GEOquery ArrayExpress
updated 8.4 years ago by 21k • written 8.4 years ago by ▴ 720
3
votes
5
replies
2.1k
views
Tutorial: Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
R GEO geoquery geoquery error message Tutorial
3.7 years ago martinguerrerog89 ▴ 20
2
votes
5
replies
811
views
Error with GEOquery
GEOquery GEOquery
updated 15.4 years ago by ▴ 170 • written 15.5 years ago by ▴ 480
3
votes
5
replies
992
views
getGEO function doesn't download the expression data
geoquery
updated 3.2 years ago by ▴ 980 • written 3.2 years ago by ▴ 10
6
votes
5
replies
2.6k
views
Processing two-colour array data from GEO using limma when no raw data are available
limma geoquery
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
0
votes
5
replies
1.2k
views
downloading different kinds of microarray data
Sequencing Microarray Genetics Annotation gpls convert GEOquery GEOmetadb Sequencing gpls
updated 11.1 years ago by ▴ 30 • written 11.1 years ago by 21k
6
votes
5
replies
233
views
a problem of package ""
GEO GEOquery
updated 3 months ago by 15k • written 3 months ago by ▴ 20
0
votes
5
replies
837
views
Install a custom CDF file
makecdf RMA annotation biobase GEOquery
updated 2.2 years ago by 58k • written 2.2 years ago by • 0
0
votes
5
replies
781
views
GEOquery and Sample Subsets
GEOquery GEOquery
updated 8.3 years ago by 21k • written 8.3 years ago by ▴ 750
4
votes
5
replies
300
views
Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays from Geoquery
affycoretools huex10sttranscriptcluster.db affymetrix Geoquery
updated 18 months ago by 58k • written 18 months ago by ▴ 780
0
votes
5
replies
1.4k
views
assayData: 0 features
geoquery
updated 6 months ago by • 0 • written 6.0 years ago by ▴ 230
1
vote
4
replies
799
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 3.4 years ago by 21k • written 3.4 years ago by ▴ 10
0
votes
4
replies
1.5k
views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 9.3 years ago by ★ 8.2k • written 9.3 years ago by ★ 12k
2
votes
4
replies
1.0k
views
GEOquery: Missing featureNames after creating expression set from series matrix file
geoquery
updated 6.4 years ago by 58k • written 6.4 years ago by ▴ 10
0
votes
4
replies
555
views
GEOquery using keywords in R
GEO geoquery geometadb
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 10
0
votes
4
replies
810
views
Agi4x44PreProcess
convert GEOquery Agi4x44PreProcess convert GEOquery Agi4x44PreProcess
updated 11.8 years ago by ▴ 460 • written 11.8 years ago by ★ 1.3k
0
votes
4
replies
1.2k
views
GEO and Limma
limma GEOquery limma GEOquery
10.0 years ago Voke AO ▴ 760
3
votes
4
replies
697
views
getGEO Error: Duplicate identifiers for rows
geoquery getgeo
updated 3.6 years ago by 21k • written 3.6 years ago by ▴ 10
0
votes
4
replies
718
views
stuck in biocLite("GEOquery")
GEOquery GEOquery
updated 10.5 years ago by ★ 8.2k • written 10.6 years ago by ▴ 420
5
votes
4
replies
2.6k
views
GEOquery Fails to Download Series Matrix File
geoquery ncbi geo geo data
4.9 years ago fongchunchan ▴ 30
0
votes
4
replies
1.1k
views
Meta data for gene from GEO
GEOquery GEOmetadb GEOquery GEOmetadb
updated 7.8 years ago by 21k • written 7.8 years ago by ★ 12k
0
votes
4
replies
3.3k
views
GEOquery
convert GEOquery convert GEOquery
updated 11.5 years ago by 21k • written 11.5 years ago by ★ 4.3k
2
votes
4
replies
906
views
GEOquery: Shifted data columns in phenotype data
geoquery getgeo
5.7 years ago rfb • 0
0
votes
4
replies
778
views
error reading GSE file
GEOquery GEOquery
updated 6.7 years ago by • 0 • written 10.2 years ago by ▴ 570
0
votes
4
replies
1.3k
views
GSE normalization
limma GEOquery limma GEOquery
updated 14.3 years ago by ★ 1.2k • written 14.3 years ago by ▴ 100
0
votes
4
replies
1.1k
views
GEOQuery - MAS5 normalized data
GEOquery GEOquery
updated 12.9 years ago by ★ 1.3k • written 12.9 years ago by ▴ 590
0
votes
4
replies
1.4k
views
GEOquery getGEO error in read.table
Microarray GEOquery Microarray GEOquery
updated 8.7 years ago by ▴ 160 • written 8.7 years ago by ▴ 210
2
votes
4
replies
1.8k
views
getGEO function not identifying local file
geoquery getGEO
6.0 years ago Prasanth ▴ 20
50 results • Page 1 of 1
Recent ...
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Comment: Warning messages on Apple M1 BigSur by Alexandre • 0
ok thanks, but that means R will run slower right ? Since Rosetta 2 is emulation environment, correct ?
Answer: Bioinformatics Research Associate, University of Adelaide by keong • 0
I aspire to be a bioinformatics expert, maybe this is the best opportunity for me try this vacancy,thanks for this information great off…
Answer: Effect size using likelihood ratio test in DESeq2 by ATpoint ▴ 830
The thing with time-courses is that you do not necessarily have binary patterns of gene expression changes being only up-or downregulated. …
Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Votes
Answer: Warning messages on Apple M1 BigSur
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
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