Showing : GO • reset
0
votes
2
replies
1.1k
views
GO analysis without gene IDs?
deseq2 annotation go
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 60
0
votes
0
replies
959
views
enrichplot pakage no output plot
go
5.8 years ago Hamidreza Hashemi ▴ 20
2
votes
1
reply
8.2k
views
GO of clusterprofiler
go
updated 5.8 years ago by ★ 4.0k • written 5.8 years ago by • 0
1
vote
3
replies
2.3k
views
TopGO significant genes
TopGO GO
5.8 years ago Al-a ▴ 10
5
votes
7
replies
3.8k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 5.8 years ago by 53k • written 5.8 years ago by ▴ 60
6
votes
6
replies
3.3k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 5.8 years ago by 53k • written 5.8 years ago by ▴ 60
0
votes
2
replies
12k
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
updated 2.8 years ago by • 0 • written 5.8 years ago by • 0
0
votes
0
replies
1.6k
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
5.8 years ago hasse.bossenbroek • 0
0
votes
0
replies
713
views
ViSEAGO, merge_enrich_terms error
go
5.8 years ago m.n • 0
0
votes
4
replies
1.7k
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
5.8 years ago CUCIO199 • 0
2
votes
4
replies
5.4k
views
How to get list of all GOIDs with all genes in each GO term?
go annotation
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
1
vote
3
replies
1.3k
views
Extract the relevant information of the genes sets from the Bioconductor annotation package
org.Rn.eg.db annotation go
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
0
votes
0
replies
721
views
Program to calculate genetic distances with long sequences
probe go
5.9 years ago antoniorevail • 0
0
votes
0
replies
947
views
News: RNAseq data analysis with R and Bioconductor
limma deseq2 go edger News
5.9 years ago info ▴ 10
3
votes
4
replies
3.1k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase go gene ontology goslim
5.9 years ago • updated 2.9 years ago samwhite ▴ 20
7
votes
9
replies
5.6k
views
GSEABase - View/extract GO terms mapped to each GOslim
go GSEABase GOslim gene ontology
5.9 years ago • updated 2.8 years ago samwhite ▴ 20
1
vote
2
replies
970
views
Species, supported by the clusterProfiler package
software error go
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
2
replies
1.3k
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
2
replies
940
views
Go terms for Ensemble gene list
go
6.1 years ago Raquel • 0
0
votes
1
reply
2.0k
views
Cannot Install Org.Hs.eg.db package in RStudio
software error annotation go
updated 6.3 years ago by 4.3k • written 6.3 years ago by • 0
2
votes
11
replies
4.3k
views
R gives error when trying to install EnsDb.Hsapiens.v75 package
go
updated 6.3 years ago by 68k • written 6.3 years ago by • 0
1
vote
2
replies
1.2k
views
How could I get index file
go
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
votes
1
reply
2.9k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
6.4 years ago Raito92 ▴ 60
2
votes
1
reply
1.5k
views
biomaRt fails to retrieve GO description for some particular gene
biomart go r bioconductor symbol
6.4 years ago foehn ▴ 100
0
votes
1
reply
952
views
Choosing Gene ontology package
go annotation GOenrichment
updated 6.5 years ago by ▴ 760 • written 6.5 years ago by • 0
0
votes
1
reply
3.0k
views
cnetplot graph independently.
go annotation
updated 6.5 years ago by • 0 • written 6.5 years ago by • 0
3
votes
3
replies
1.9k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
4
votes
1
reply
12k
views
WGCNA-unable to install GO.db package
go cancer
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
1
vote
1
reply
1.0k
views
Annotating rice affymetrix data from different gse through biomart
annotation go
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
1
vote
7
replies
2.4k
views
Add annotation, biomaRt installation
software error annotation go
updated 6.9 years ago by ★ 6.6k • written 6.9 years ago by ▴ 10
0
votes
5
replies
3.3k
views
Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
annotation go clusterProfiler org.Sc.sgd.db
6.9 years ago Malcolm Cook ★ 1.6k
0
votes
7
replies
2.9k
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
0
votes
0
replies
594
views
GSE codes Problem
go
6.9 years ago imrankhan441 • 0
0
votes
1
reply
1.7k
views
PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db update annotation go
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
0
votes
1
reply
1.4k
views
How to change the siez of lables in heatmap
software error go dose heatplot gseGo
7.0 years ago aboumarshal • 0
0
votes
1
reply
1.5k
views
STRINGdb: enrichment function raises error
STRINGdb stringdb gene set enrichment analysis software error go
7.2 years ago wsciekly.maciek ▴ 10
2
votes
2
replies
4.1k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
3
votes
3
replies
4.8k
views
how to find ensembl genes belonging to a GO category?
biomart gene ontology GO
updated 7.3 years ago by 68k • written 7.3 years ago by ★ 4.1k
1
vote
1
reply
1.6k
views
News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
7.3 years ago laurent.albou • 0
3
votes
3
replies
1.7k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 7.4 years ago by • 0 • written 7.4 years ago by ▴ 10
0
votes
1
reply
1.7k
views
GOseq output but strange warning message!
GOseq GO pwf goseq
7.4 years ago TB18 • 0
1
vote
1
reply
1.9k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 7.5 years ago by 53k • written 7.5 years ago by • 0
1
vote
1
reply
1.7k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
3
votes
5
replies
2.5k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 30
0
votes
9
replies
6.2k
views
What does "level" argument mean in groupGO function (cluster profiler)?
clusterprofiler go groupGO
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 370
0
votes
2
replies
1.6k
views
Difference between biomart R and biomart website GO query
biomart ensemblbiomart go getbm
updated 7.8 years ago by ★ 6.6k • written 7.8 years ago by ▴ 20
0
votes
1
reply
2.4k
views
how to run GO enrichment analysis for non-model organisms (errors when using hyperGTest)
gostats GO non_model
7.8 years ago zhaoran1124 • 0
1
vote
4
replies
2.0k
views
Upregulation and Downregulation of Gene Ontology terms
microarray david differential gene expression GO
7.9 years ago seendey16 • 0
1
vote
3
replies
2.6k
views
GO terms: Annotation for HumanMethylation450
Annotation GO probe Annotation GO probe
updated 7.9 years ago by • 0 • written 12.8 years ago by ▴ 970
0
votes
4
replies
1.9k
views
Problems with the correct installation of GOseq
go
updated 7.9 years ago by • 0 • written 7.9 years ago by • 0
1,936 results • Page 2 of 39
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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