Showing : GO • reset
0
votes
2
replies
1.1k
views
GO analysis without gene IDs?
deseq2 annotation go
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 60
0
votes
0
replies
925
views
enrichplot pakage no output plot
go
5.6 years ago Hamidreza Hashemi ▴ 20
2
votes
1
reply
7.9k
views
GO of clusterprofiler
go
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
1
vote
3
replies
2.2k
views
TopGO significant genes
TopGO GO
5.6 years ago Al-a ▴ 10
5
votes
7
replies
3.6k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
6
votes
6
replies
3.1k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
0
votes
2
replies
12k
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
updated 2.6 years ago by • 0 • written 5.6 years ago by • 0
0
votes
0
replies
1.4k
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
5.6 years ago hasse.bossenbroek • 0
0
votes
0
replies
694
views
ViSEAGO, merge_enrich_terms error
go
5.6 years ago m.n • 0
0
votes
4
replies
1.6k
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
5.6 years ago CUCIO199 • 0
2
votes
4
replies
5.1k
views
How to get list of all GOIDs with all genes in each GO term?
go annotation
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
1
vote
3
replies
1.2k
views
Extract the relevant information of the genes sets from the Bioconductor annotation package
org.Rn.eg.db annotation go
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
0
votes
0
replies
688
views
Program to calculate genetic distances with long sequences
probe go
5.7 years ago antoniorevail • 0
0
votes
0
replies
914
views
News: RNAseq data analysis with R and Bioconductor
limma deseq2 go edger News
5.7 years ago info ▴ 10
3
votes
4
replies
3.0k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase go gene ontology goslim
5.7 years ago • updated 2.7 years ago samwhite ▴ 20
7
votes
9
replies
5.3k
views
GSEABase - View/extract GO terms mapped to each GOslim
go GSEABase GOslim gene ontology
5.8 years ago • updated 2.6 years ago samwhite ▴ 20
1
vote
2
replies
917
views
Species, supported by the clusterProfiler package
software error go
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
2
replies
1.2k
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
2
replies
915
views
Go terms for Ensemble gene list
go
5.9 years ago Raquel • 0
0
votes
1
reply
1.9k
views
Cannot Install Org.Hs.eg.db package in RStudio
software error annotation go
updated 6.1 years ago by 4.2k • written 6.1 years ago by • 0
2
votes
11
replies
4.2k
views
R gives error when trying to install EnsDb.Hsapiens.v75 package
go
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
1
vote
2
replies
1.1k
views
How could I get index file
go
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
0
votes
1
reply
2.9k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
6.2 years ago Raito92 ▴ 60
2
votes
1
reply
1.4k
views
biomaRt fails to retrieve GO description for some particular gene
biomart go r bioconductor symbol
6.3 years ago • updated 6.2 years ago foehn ▴ 100
0
votes
1
reply
905
views
Choosing Gene ontology package
go annotation GOenrichment
updated 6.3 years ago by ▴ 760 • written 6.3 years ago by • 0
0
votes
1
reply
2.9k
views
cnetplot graph independently.
go annotation
updated 6.3 years ago by • 0 • written 6.3 years ago by • 0
3
votes
3
replies
1.8k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
4
votes
1
reply
12k
views
WGCNA-unable to install GO.db package
go cancer
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 20
1
vote
1
reply
964
views
Annotating rice affymetrix data from different gse through biomart
annotation go
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
1
vote
7
replies
2.3k
views
Add annotation, biomaRt installation
software error annotation go
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by ▴ 10
0
votes
5
replies
3.2k
views
Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
annotation go clusterProfiler org.Sc.sgd.db
6.7 years ago Malcolm Cook ★ 1.6k
0
votes
7
replies
2.7k
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
0
replies
567
views
GSE codes Problem
go
6.8 years ago imrankhan441 • 0
0
votes
1
reply
1.6k
views
PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db update annotation go
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
0
votes
1
reply
1.4k
views
How to change the siez of lables in heatmap
software error go dose heatplot gseGo
6.8 years ago aboumarshal • 0
0
votes
1
reply
1.4k
views
STRINGdb: enrichment function raises error
STRINGdb stringdb gene set enrichment analysis software error go
7.0 years ago wsciekly.maciek ▴ 10
2
votes
2
replies
3.9k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 7.0 years ago by 68k • written 7.0 years ago by • 0
3
votes
3
replies
4.6k
views
how to find ensembl genes belonging to a GO category?
biomart gene ontology GO
updated 7.1 years ago by 68k • written 7.1 years ago by ★ 4.1k
1
vote
1
reply
1.5k
views
News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
7.1 years ago laurent.albou • 0
3
votes
3
replies
1.6k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 7.2 years ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.6k
views
GOseq output but strange warning message!
GOseq GO pwf goseq
7.2 years ago TB18 • 0
1
vote
1
reply
1.8k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 7.3 years ago by 53k • written 7.3 years ago by • 0
1
vote
1
reply
1.5k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 7.3 years ago by 68k • written 7.3 years ago by • 0
3
votes
5
replies
2.4k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 30
0
votes
9
replies
6.0k
views
What does "level" argument mean in groupGO function (cluster profiler)?
clusterprofiler go groupGO
updated 7.6 years ago by 68k • written 7.6 years ago by ▴ 370
0
votes
2
replies
1.6k
views
Difference between biomart R and biomart website GO query
biomart ensemblbiomart go getbm
updated 7.6 years ago by ★ 6.6k • written 7.6 years ago by ▴ 20
0
votes
1
reply
2.3k
views
how to run GO enrichment analysis for non-model organisms (errors when using hyperGTest)
gostats GO non_model
7.6 years ago zhaoran1124 • 0
1
vote
4
replies
1.9k
views
Upregulation and Downregulation of Gene Ontology terms
microarray david differential gene expression GO
7.7 years ago seendey16 • 0
1
vote
3
replies
2.6k
views
GO terms: Annotation for HumanMethylation450
Annotation GO probe Annotation GO probe
updated 7.7 years ago by • 0 • written 12.6 years ago by ▴ 970
0
votes
4
replies
1.8k
views
Problems with the correct installation of GOseq
go
updated 7.7 years ago by • 0 • written 7.7 years ago by • 0
1,936 results • Page 2 of 39
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Comment: Alternative to BrainArray custom CDF packages for Affymetrix chips? by insuraasanaa3scetaxrealty • 0
Lamento que el acceso a los paquetes BrainArray esté fallando; cuando ocurren estos problemas, es util contar con recursos alternativos bie…
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Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo by shepherl 4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
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We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
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I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…
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Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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