Showing : GOseq • reset
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News: Gene Set Enrichment Analysis in Bioconductor course
GSEABase GeneSetEnrichment goseq
6 months ago info ▴ 10
5
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9
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2.5k
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Inconsistent nullp and goseq enrichment results across operating systems
goseq
written 14 months ago by • 0
2
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3
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1.2k
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package goseq seems to be not available on the latest version of R
goseq
updated 16 months ago by 52k • written 16 months ago by ▴ 20
1
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2
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705
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
18 months ago thomas • 0
1
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4
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1.1k
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goseq, warning and strange plot from nullp
goseq
19 months ago boczniak767 ▴ 740
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1
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1.0k
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Downstream analysis with Differentially Expressed Genes
DESeq2 GO goseq FunctionalAnnotation
updated 2.8 years ago by ▴ 10 • written 2.8 years ago by • 0
0
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5
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3.4k
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GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 3.3 years ago by 68k • written 3.3 years ago by ▴ 30
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2
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1.3k
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goseq: Wallenius Vs Fisher's Noncentral Hypergeometric Distribution
goseq
3.3 years ago Steve Pederson ▴ 170
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2
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1.3k
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Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
3.5 years ago • updated 3.4 years ago m.glymenaki • 0
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1.1k
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Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 3.5 years ago by 43k • written 3.5 years ago by • 0
1
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10
replies
3.6k
views
How to run Goseq for list of ensembl gene IDs
goseq
4.4 years ago Lucky • 0
1
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4
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2.1k
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goseq package loading issues
DESeq2 goseq
4.5 years ago avinashi • 0
3
votes
9
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2.7k
views
Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
2
votes
3
replies
2.6k
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Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 30
2
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2
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1.6k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
0
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1
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1.3k
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non-native GO annotation cannot be successfully introduced into Goseq
goseq rnaseq r
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
1
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2
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1.3k
views
GOSeq analysis in rice
goseq
5.2 years ago • updated 5.0 years ago Jitendra ▴ 10
0
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2
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1.1k
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Goseq_analysis related help
goseq
5.2 years ago kumararya563 • 0
0
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0
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718
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go seq related help, where I need to do mapping between go term and the protein -id
goseq
5.2 years ago kumararya563 • 0
3
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2
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1.5k
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Goseq analysis related help.
annotation goseq
updated 5.2 years ago by ★ 13k • written 5.2 years ago by • 0
0
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0
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1.3k
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
5.4 years ago hasse.bossenbroek • 0
4
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5
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2.4k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
5.7 years ago gdalsky ▴ 40
0
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1
reply
2.7k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
5.9 years ago Raito92 ▴ 60
2
votes
6
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1.6k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by ▴ 60
2
votes
1
reply
2.4k
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GOseq analysis with only upregulated or downregulated genes
goseq
updated 6.4 years ago by ▴ 320 • written 6.4 years ago by ▴ 180
2
votes
2
replies
1.5k
views
Using GOseq for custom gene set enrichment test
goseq
updated 6.6 years ago by 52k • written 6.6 years ago by • 0
2
votes
2
replies
3.8k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
4
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10
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3.8k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
9.8 years ago • updated 6.8 years ago Jakub ▴ 50
1
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3
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2.4k
views
goseq: Formatting category list for use with goseq
goseq category test
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 40
0
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0
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1.1k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.0 years ago zhu • 0
0
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1
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1.5k
views
GOseq output but strange warning message!
GOseq GO pwf goseq
7.0 years ago TB18 • 0
1
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1
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1.7k
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Goseq output with too many GO terms per category
go goseq goterm category
updated 7.0 years ago by 52k • written 7.0 years ago by • 0
3
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2
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1.4k
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numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
goseq
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
1
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9
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2.9k
views
Using goseq with unsupported organism
goseq
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
0
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0
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1.2k
views
GOseq No Underrepresented Categories
goseq go enrichment
7.2 years ago mart1139 • 0
8
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10
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2.2k
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Genes listed in GO categories
goseq biomart
updated 7.2 years ago by 52k • written 7.2 years ago by • 0
0
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2
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1.2k
views
goseq with hypergeometric method
goseq
updated 7.2 years ago by 52k • written 7.2 years ago by ▴ 40
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0
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1.7k
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I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
7.4 years ago nancyjwahl7 • 0
2
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6
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2.6k
views
Can Tximport average transcript length be used for GOSeq?
deseq2 tximport goseq
7.5 years ago casey.rimland ▴ 170
0
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6
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2.1k
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How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
7.5 years ago dusan.petrovic • 0
0
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2
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4.3k
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DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
0
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3
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1.7k
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What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 7.6 years ago by 52k • written 7.6 years ago by • 0
0
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1
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3.0k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
0
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1
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2.1k
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 10
1
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2
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3.5k
views
GOseq: Determining ENSG IDs Associated with Genes Summarized by `numDEInCat` for Each Ontology Term
goseq gene ontology
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
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1
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1.5k
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Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
goseq rtracklayer
7.9 years ago mgdrnl • 0
2
votes
3
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2.2k
views
GOseq error on running nullp
goseq GO term
updated 7.9 years ago by 52k • written 7.9 years ago by • 0
0
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1
reply
2.4k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
0
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2
replies
2.0k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 8.0 years ago by ★ 29k • written 8.0 years ago by ▴ 10
0
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0
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1.6k
views
gene length file for GOseq
goseq
8.0 years ago mictadlo ▴ 10
161 results • Page 1 of 4
Recent ...
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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