Showing : Gene • reset
9
votes
10
replies
1.5k
views
Mapping of GENE symbols into ENTREZ
limma annotation Gene
4.7 years ago • updated 4.2 years ago omarrafiqued ▴ 50
6
votes
7
replies
2.2k
views
GEOquery reading error on Windows.
GEOquery GEO Gene
updated 2.5 years ago by 65k • written 2.5 years ago by ▴ 50
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 5.1 years ago by 50k • written 5.1 years ago by ▴ 60
5
votes
5
replies
1.9k
views
threeUTRsByTranscript per GENE
GenomicFeatures Transcript gene threeUTRsByTranscript
updated 3.2 years ago by ★ 1.5k • written 4.7 years ago by ▴ 10
3
votes
2
replies
3.5k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray omim gene disorder
updated 9.1 years ago by ▴ 30 • written 9.1 years ago by ▴ 20
3
votes
3
replies
1.2k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.8 years ago by 65k • written 4.8 years ago by • 0
3
votes
2
replies
538
views
please resolve the issue
gene ExpressionData
updated 13 months ago by 65k • written 13 months ago by • 0
2
votes
4
replies
965
views
Joint pathway Analysis using both gene and metabolite data sets
data integration gene metabolite
4.1 years ago emisecherre • 0
2
votes
5
replies
1.3k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2 gene format
4.8 years ago miriam.mueller • 0
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 4.7 years ago by ★ 1.3k • written 4.7 years ago by • 0
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 200 • written 3.5 years ago by • 0
1
vote
4
replies
809
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
18 months ago faiza • 0
1
vote
2
replies
731
views
gene ontologies for a set of genes
gene ontology
2.7 years ago Bogdan ▴ 670
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2 gene columns output
updated 8.5 years ago by 41k • written 8.5 years ago by ▴ 10
0
votes
2
replies
1.0k
views
I want to use global test.
gene r clst rpy globaltest
3.1 years ago Kim • 0
0
votes
0
replies
458
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
12 months ago Priya • 0
0
votes
0
replies
531
views
Gene expression changes in one condition
RNASeq Gene ExpressionData
2.5 years ago AZ ▴ 30
0
votes
2
replies
3.6k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
1
reply
297
views
gene aligning reference
geneRecommender gene
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
2
replies
3.7k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 2.1 years ago by ▴ 20 • written 2.2 years ago by • 0
0
votes
0
replies
632
views
TFutils database
TFutils mouse gene convert
2.9 years ago nicocillari • 0
0
votes
2
replies
558
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
12 months ago Liliian • 0
0
votes
2
replies
1.6k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86 gene
2.1 years ago beslinail • 0
0
votes
4
replies
999
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
3
replies
1.0k
views
PureCN gene LOH very common, amp/del not
PureCN gene amplification deletion loh
updated 4.0 years ago by ▴ 130 • written 4.0 years ago by ▴ 10
0
votes
1
reply
826
views
WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 20 months ago by ▴ 50 • written 20 months ago by ▴ 20
26 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, 21 minutes ago
Iran, 48 minutes ago
Bangalore, 1 hour ago
Sweden, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Traffic: 650 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6