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shepherl
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12 months ago
shepherl
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18 months ago
shepherl
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2.1 years ago • updated 2.0 years ago
shepherl
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updated 2.2 years ago by
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8
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2.8 years ago
shepherl
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669
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updated 3.0 years ago by
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730
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written 3.0 years ago by
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3.0 years ago
shepherl
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updated 3.9 years ago by
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updated 3.9 years ago by
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written 3.9 years ago by
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updated 4.0 years ago by
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updated 4.3 years ago by
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written 4.3 years ago by
alex
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updated 4.7 years ago by
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updated 4.9 years ago by
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updated 5.3 years ago by
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6.1 years ago
shepherl
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updated 7.2 years ago by
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Recent ...
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
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Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
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Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
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Hi,
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If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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